Bioconductor NA values

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PureCN NA values

updated 5.8 years ago by markus.riester ▴ 130 • written 5.8 years ago by twtoal ▴ 10

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DESeq2 NA values

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by arfranco ▴ 130

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limma multiple factor design NA values design and contrast matrix

updated 8.0 years ago by Gordon Smyth 52k • written 8.0 years ago by svlachavas ▴ 840

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Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0

how you did it pls explain

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k

If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…

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A: Effect of lfcThreshold on p-value in DESeq2

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Teacher to Gordon Smyth 52k

Scholar to James W. MacDonald 68k