Bioconductor NA values

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PureCN NA values

updated 5.7 years ago by markus.riester ▴ 130 • written 5.7 years ago by twtoal ▴ 10

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DESeq2 NA values

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by arfranco ▴ 130

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limma multiple factor design NA values design and contrast matrix

updated 7.9 years ago by Gordon Smyth 52k • written 7.9 years ago by svlachavas ▴ 840

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Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0

`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …

Answer: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k

voom is a DE analysis method rather than a normalization method. voom expects the design matrix to be the same complete design matrix that …

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Answer: enrichGOgradient color change

How do I fix an odd voom plot in a combined dataset?

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