Showing : MutationalPatterns • reset
0
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2
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891
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could not find function "get_known_signatures"
MutationalPatterns
updated 2.0 years ago by 6.7k • written 2.0 years ago by ▴ 60
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821
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Do you know a sofware to draw pedigrees + haplotypes?
SequencingData STR MutationalPatterns pedigree HapMap
3.4 years ago Negar • 0
2
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2
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1.2k
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MutationalPatterns Signature Database Versions
MutationalPatterns
3.6 years ago Dario Strbenac ★ 1.5k
0
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4
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2.2k
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Error in seqlevelsStyle after creating a BSgenome package
bsgenome MutationalPatterns
4.7 years ago sibyl.bertrand • 0
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1.6k
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Error in NMF estimation
MutationalPatterns NMF
5.6 years ago TRASA • 0
5 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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