Bioconductor MoleculeExperiment

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JobPosting CuratedAtlasQueryR MoleculeExperiment SingleCellExperiment SpatialExperiment

7 months ago Stefano Mangiola ▴ 20

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tidySpatialExperiment SpatialExperiment MoleculeExperiment

9 months ago info ▴ 10

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MoleculeExperiment DifferentialExpression DESeq2

updated 13 months ago by ATpoint ★ 4.6k • written 13 months ago by michelafrancesconi8 • 0

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MoleculeExperiment

updated 16 months ago by ATpoint ★ 4.6k • written 16 months ago by irenekokosaikia • 0

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Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by alishakhannight • 0

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Comment: Postdoc/RA position: Software Engineer For R and High-Performance Computing by alishakhannight • 0

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Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k

My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …

Answer: Csaw normalization strategies - general inquiry by Aaron Lun ★ 28k

IIUC you're saying that 68 and 71 are more similar to each other than to all of the other replicates (more efficient IP, if I'm reading you…

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A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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