0
votes
2
replies
1.3k
views
Recent ...
Replies
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Leonardo Collado Torres
★
1.1k
I dove a bit deeper to understand more the differences between `scuttle::logNormCounts()` and `edgeR::cpm(log = TRUE)` at https://github.co…
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Leonardo Collado Torres
★
1.1k
Thanks for the answer James! I had forgotten about the "PM" part of CPM when I met with Kinnary yesterday!
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Leonardo Collado Torres
★
1.1k
Thank you Gordon for the detailed answer, examples, and link to the unpublished thesis!
Answer: Make DEXSeq plot normal scale
by
James W. MacDonald
68k
It's hard coded, so you will not be able to change the vertical axis of the top plot without getting the code and modifying. You can simply…
Answer: RNA Seq using Lrt
by
James W. MacDonald
68k
When you perform an LRT, you are testing the coefficients that are no longer included in the reduced model. So you are testing to see if in…
Votes
Awards
• All
Popular Question to
Gordon Smyth
52k
Popular Question to
shepherl
4.1k
Popular Question to
Mengjun
•
0
Popular Question to
Dario Strbenac
★
1.6k
Locations
• All
Germany, 15 minutes ago
United States, 19 minutes ago
Japan, 24 minutes ago
United States, 31 minutes ago
Denmark, 34 minutes ago
Germany, 15 minutes ago
United States, 19 minutes ago
Japan, 24 minutes ago
United States, 31 minutes ago
Denmark, 34 minutes ago
Traffic: 984 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6