Bioconductor Missing Data

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.3 years ago jam526 • 0

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3.2k

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deseq2 sample_table missing data

updated 6.1 years ago by g.wang2 • 0 • written 9.9 years ago by anpham ▴ 60

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1.7k

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deseq2 paired samples missing data multiple treatments

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by greg.deakin • 0

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2.9k

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limma missing data methylation normalization

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by mheydarpour ▴ 10

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2.7k

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limma contrast missing data lmfit makecontrasts

updated 7.5 years ago by Gordon Smyth 52k • written 7.5 years ago by wewolski ▴ 10

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991

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pcamethods missing data

7.9 years ago eli-sava • 0

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software error rnaseq wgcna missing data

9.2 years ago • updated 8.8 years ago dvillarlozano ▴ 10

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1.2k

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cellhts2 upload missing data

updated 9.1 years ago by Joseph Barry ▴ 160 • written 9.1 years ago by zmorehouse • 0

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1.1k

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missing data filter

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by rgescudero • 0

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1.7k

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missing data missing value imputation impute MICE bioconductor

9.4 years ago svlachavas ▴ 840

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1.6k

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software error missing data workflowinstall

9.8 years ago anoll2 • 0

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bayseq missing data

9.8 years ago k.w.lau • 0

12 results • Page 1 of 1

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Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0

Hello again, Can using inSilicoMerging handle this situation?

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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