Bioconductor Missing Data

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1.7k

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.0 years ago jam526 • 0

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3.1k

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deseq2 sample_table missing data

updated 5.8 years ago by g.wang2 • 0 • written 9.6 years ago by anpham ▴ 60

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deseq2 paired samples missing data multiple treatments

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by greg.deakin • 0

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2.8k

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limma missing data methylation normalization

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by mheydarpour ▴ 10

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2.6k

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limma contrast missing data lmfit makecontrasts

updated 7.2 years ago by Gordon Smyth 51k • written 7.2 years ago by wewolski ▴ 10

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942

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pcamethods missing data

7.6 years ago eli-sava • 0

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software error rnaseq wgcna missing data

8.9 years ago • updated 8.5 years ago dvillarlozano ▴ 10

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1.1k

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cellhts2 upload missing data

updated 8.8 years ago by Joseph Barry ▴ 160 • written 8.8 years ago by zmorehouse • 0

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1.1k

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missing data filter

updated 8.9 years ago by James W. MacDonald 67k • written 8.9 years ago by rgescudero • 0

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missing data missing value imputation impute MICE bioconductor

9.1 years ago svlachavas ▴ 830

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software error missing data workflowinstall

9.5 years ago anoll2 • 0

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bayseq missing data

9.5 years ago k.w.lau • 0

12 results • Page 1 of 1

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k