Bioconductor Missing Data

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.0 years ago jam526 • 0

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3.1k

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deseq2 sample_table missing data

updated 5.8 years ago by g.wang2 • 0 • written 9.7 years ago by anpham ▴ 60

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deseq2 paired samples missing data multiple treatments

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by greg.deakin • 0

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2.8k

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limma missing data methylation normalization

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by mheydarpour ▴ 10

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2.6k

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limma contrast missing data lmfit makecontrasts

updated 7.2 years ago by Gordon Smyth 51k • written 7.3 years ago by wewolski ▴ 10

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pcamethods missing data

7.6 years ago eli-sava • 0

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software error rnaseq wgcna missing data

8.9 years ago • updated 8.6 years ago dvillarlozano ▴ 10

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1.1k

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cellhts2 upload missing data

updated 8.8 years ago by Joseph Barry ▴ 160 • written 8.8 years ago by zmorehouse • 0

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1.1k

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missing data filter

updated 9.0 years ago by James W. MacDonald 67k • written 9.0 years ago by rgescudero • 0

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missing data missing value imputation impute MICE bioconductor

9.1 years ago svlachavas ▴ 830

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software error missing data workflowinstall

9.5 years ago anoll2 • 0

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bayseq missing data

9.6 years ago k.w.lau • 0

12 results • Page 1 of 1

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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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