Showing : MicrobiomeData • reset
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Species level information couldn't find with DADA2 bioconductor package
Metagenomics dada2 MicrobiomeData
4 months ago • updated 10 weeks ago abhisek001 • 0
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How to correctly interpret ALDEx2 output - differential abundance testing
MicrobiomeData ALDEx2
updated 19 months ago by • 0 • written 23 months ago by • 0
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Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
21 months ago abhisek001 • 0
1
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News: Virtual talk “Model Misspecification in Microbiome Studies” by Amy D Willis
MicrobiomeData Microbiome
23 months ago Levi Waldron ★ 1.1k
2
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HMP1-II Metagenomic Data
MicrobiomeData curatedMetagenomicData
23 months ago Pauline ▴ 20
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WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network Transcriptomics MicrobiomeData RNASEQ WCGNA
2.2 years ago Julieta • 0
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Editing Plots Generated Using MicrobiomeAnalyst
MicrobiomeData microbiome offtopic
updated 3.3 years ago by 67k • written 3.3 years ago by • 0
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Adding insect abundance data to SparCC Analysis
sparcc Microbiome microbiomeExplorer MicrobiomeData
updated 3.4 years ago by ★ 4.0k • written 3.4 years ago by • 0
8 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
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A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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