Bioconductor MicrobiomeData

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Metagenomics dada2 MicrobiomeData

5 months ago • updated 3 months ago abhisek001 • 0

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2.5k

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MicrobiomeData ALDEx2

updated 20 months ago by Lucie • 0 • written 2.0 years ago by RvH • 0

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MicrobiomeData R microbiomeutilities Install

22 months ago abhisek001 • 0

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MicrobiomeData Microbiome

2.0 years ago Levi Waldron ★ 1.1k

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876

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MicrobiomeData curatedMetagenomicData

2.1 years ago • updated 2.0 years ago Pauline ▴ 20

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691

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Network Transcriptomics MicrobiomeData RNASEQ WCGNA

2.3 years ago Julieta • 0

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1.1k

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MicrobiomeData microbiome offtopic

updated 3.4 years ago by James W. MacDonald 67k • written 3.4 years ago by gwagz8 • 0

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sparcc Microbiome microbiomeExplorer MicrobiomeData

updated 3.5 years ago by Kevin Blighe ★ 4.0k • written 3.5 years ago by GlycineMax • 0

8 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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