Showing : MicroarrayData • reset
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Batch correction for microarray
BatchEffect sva MicroarrayData
3 days ago Shaimaa Gamal • 0
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166
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Ph.D. scholar
WGCNA DataNormalization MicroarrayData
updated 3 months ago by ★ 4.8k • written 3 months ago by • 0
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1.1k
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Consistent Decimals In Data After Antibody Array Background Correction Using Limma:nec Function
limma MicroarrayData Normalization
5 months ago Ai • 0
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2
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576
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Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
13 months ago Mj.A. • 0
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7
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1.2k
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DEG Filtering
MicroarrayData limma Genefiltering
updated 13 months ago by 52k • written 13 months ago by • 0
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limma: vooma mean-variance trend and data filtration
MicroarrayData limma
13 months ago Lily Cheang ▴ 10
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962
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Is it possible to extract the expression of a single group without making comparisons?
MicroarrayData hta20transcriptcluster.db
updated 20 months ago by 52k • written 20 months ago by • 0
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8
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Can the limma package be applied to Log2 RUV-normalized data?
RUVnormalizeData MicroarrayData limma
updated 16 months ago by • 0 • written 23 months ago by ▴ 10
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1.2k
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Error in getCdfInfo(object) :
MicroarrayData
2.0 years ago kobra • 0
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930
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
2.2 years ago agamemnon • 0
2
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1
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841
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Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
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Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
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2
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1.4k
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
2.3 years ago dqt • 0
2
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2
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846
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
2.5 years ago evan.j.williams ▴ 10
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3.6k
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Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 2.2 years ago by 52k • written 2.5 years ago by • 0
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1
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763
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Finding negative control in the array using R
R MicroarrayData
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
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721
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Filtering single-channel Affymetrix probes
filtering probe MicroarrayData
2.7 years ago Fatemeh • 0
2
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2
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1.6k
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the difference between getGEO and getGEOSuppFiles
MicroarrayData
2.7 years ago Fatemeh • 0
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1
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823
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IS DGE possible with normalized microarray expression data and Limma ?
limma MicroarrayData
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
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1.0k
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.8 years ago by 52k • written 2.8 years ago by • 0
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8
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2.0k
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Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
2.8 years ago YC • 0
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2
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1.1k
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.9 years ago Mikołaj Mierzejewski • 0
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1.6k
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Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.9 years ago Mikołaj Mierzejewski • 0
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1.1k
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Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
3.0 years ago amir.rakhimov.b • 0
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2
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1.1k
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How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
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4
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1.2k
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getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
3.1 years ago Haoran • 0
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1
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1.1k
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
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1
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986
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 3.5 years ago by 52k • written 3.5 years ago by • 0
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3
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1.6k
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Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
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2
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814
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Adj. P-value identical and high for all the genes
MicroarrayData
3.6 years ago Adriana • 0
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1
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1.6k
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Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 3.6 years ago by 68k • written 3.6 years ago by ▴ 50
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5
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2.2k
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Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 3.8 years ago by 52k • written 3.9 years ago by • 0
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1
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1.9k
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How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.9 years ago by ★ 4.0k • written 4.0 years ago by • 0
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2
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2.5k
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How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
4.0 years ago waiyin0923 • 0
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2
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2.1k
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WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
4.2 years ago jpwl2 • 0
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4
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1.7k
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Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
4.2 years ago snijesh ▴ 200
3
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9
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1.9k
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limma analysis when only Cy5 was used
MicroarrayData limma Microarray
4.2 years ago Daniel.Schnell • 0
37 results • Page 1 of 1
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Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt by Rob • 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R? by ben • 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open! by Ali • 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
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A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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