Showing : MicroarrayData • reset
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Consistent Decimals In Data After Antibody Array Background Correction Using Limma:nec Function
limma MicroarrayData Normalization
7 weeks ago Ai • 0
1
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2
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445
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Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
9 months ago Mj.A. • 0
5
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7
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981
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DEG Filtering
MicroarrayData limma Genefiltering
updated 9 months ago by 52k • written 9 months ago by • 0
2
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6
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1.1k
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limma: vooma mean-variance trend and data filtration
MicroarrayData limma
9 months ago Lily Cheang ▴ 10
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3
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868
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Is it possible to extract the expression of a single group without making comparisons?
MicroarrayData hta20transcriptcluster.db
updated 16 months ago by 52k • written 16 months ago by • 0
5
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8
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2.2k
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Can the limma package be applied to Log2 RUV-normalized data?
RUVnormalizeData MicroarrayData limma
updated 12 months ago by • 0 • written 19 months ago by ▴ 10
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1.1k
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Error in getCdfInfo(object) :
MicroarrayData
20 months ago kobra • 0
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0
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851
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
22 months ago agamemnon • 0
2
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1
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731
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Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 23 months ago by 67k • written 23 months ago by • 0
0
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1
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858
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Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 23 months ago by 67k • written 23 months ago by • 0
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2
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1.3k
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
24 months ago dqt • 0
2
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2
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752
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
2.2 years ago evan.j.williams ▴ 10
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17
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3.0k
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Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 23 months ago by 52k • written 2.2 years ago by • 0
0
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1
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703
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Finding negative control in the array using R
R MicroarrayData
updated 2.3 years ago by 67k • written 2.3 years ago by • 0
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0
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662
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Filtering single-channel Affymetrix probes
filtering probe MicroarrayData
2.4 years ago Fatemeh • 0
2
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2
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1.4k
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the difference between getGEO and getGEOSuppFiles
MicroarrayData
2.4 years ago Fatemeh • 0
1
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1
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779
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IS DGE possible with normalized microarray expression data and Limma ?
limma MicroarrayData
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
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1
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905
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.5 years ago by 52k • written 2.5 years ago by • 0
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8
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1.8k
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Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
2.5 years ago YC • 0
1
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2
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1.0k
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.6 years ago Mikołaj Mierzejewski • 0
1
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2
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1.4k
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Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.6 years ago Mikołaj Mierzejewski • 0
0
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2
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986
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Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.7 years ago amir.rakhimov.b • 0
0
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2
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989
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How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 2.7 years ago by 67k • written 2.7 years ago by • 0
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4
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1.1k
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getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
2.8 years ago Haoran • 0
0
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1
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1.1k
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 3.1 years ago by 67k • written 3.1 years ago by • 0
0
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1
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896
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 3.2 years ago by 52k • written 3.2 years ago by • 0
1
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3
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1.4k
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Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 3.3 years ago by 67k • written 3.3 years ago by • 0
0
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2
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763
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Adj. P-value identical and high for all the genes
MicroarrayData
3.3 years ago Adriana • 0
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1
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1.4k
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Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 3.3 years ago by 67k • written 3.3 years ago by ▴ 50
3
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5
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2.0k
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Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 3.5 years ago by 52k • written 3.6 years ago by • 0
1
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1
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1.7k
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How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.6 years ago by ★ 4.0k • written 3.6 years ago by • 0
0
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2
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2.4k
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How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.7 years ago waiyin0923 • 0
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2
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2.0k
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WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
3.9 years ago jpwl2 • 0
8
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4
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1.5k
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Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.9 years ago snijesh ▴ 200
3
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9
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1.7k
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limma analysis when only Cy5 was used
MicroarrayData limma Microarray
3.9 years ago Daniel.Schnell • 0
35 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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