Showing : MicroarrayData • reset
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Consistent Decimals In Data After Antibody Array Background Correction Using Limma:nec Function
limma MicroarrayData Normalization
1 day ago • updated 6 hours ago Ai • 0
1
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2
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396
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Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
7 months ago Mj.A. • 0
5
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7
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866
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DEG Filtering
MicroarrayData limma Genefiltering
updated 7 months ago by 51k • written 7 months ago by • 0
2
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6
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956
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limma: vooma mean-variance trend and data filtration
MicroarrayData limma
8 months ago • updated 7 months ago Lily Cheang ▴ 10
0
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3
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830
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Is it possible to extract the expression of a single group without making comparisons?
MicroarrayData hta20transcriptcluster.db
updated 14 months ago by 51k • written 14 months ago by • 0
5
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8
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2.0k
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Can the limma package be applied to Log2 RUV-normalized data?
RUVnormalizeData MicroarrayData limma
updated 11 months ago by • 0 • written 17 months ago by ▴ 10
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1.0k
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Error in getCdfInfo(object) :
MicroarrayData
18 months ago kobra • 0
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0
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826
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
20 months ago agamemnon • 0
2
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1
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700
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Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 21 months ago by 67k • written 21 months ago by • 0
0
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1
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822
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Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 21 months ago by 67k • written 21 months ago by • 0
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2
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1.2k
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
22 months ago dqt • 0
2
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2
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714
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
2.0 years ago evan.j.williams ▴ 10
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17
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2.8k
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Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 21 months ago by 51k • written 2.0 years ago by • 0
0
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1
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679
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Finding negative control in the array using R
R MicroarrayData
updated 2.2 years ago by 67k • written 2.2 years ago by • 0
0
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0
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641
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Filtering single-channel Affymetrix probes
filtering probe MicroarrayData
2.2 years ago Fatemeh • 0
2
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2
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1.3k
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the difference between getGEO and getGEOSuppFiles
MicroarrayData
2.2 years ago Fatemeh • 0
1
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1
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754
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IS DGE possible with normalized microarray expression data and Limma ?
limma MicroarrayData
updated 2.3 years ago by 67k • written 2.3 years ago by • 0
0
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1
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861
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.4 years ago by 51k • written 2.4 years ago by • 0
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8
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1.8k
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Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
2.4 years ago YC • 0
1
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2
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1.0k
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.4 years ago Mikołaj Mierzejewski • 0
1
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2
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1.3k
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Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.4 years ago Mikołaj Mierzejewski • 0
0
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2
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948
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Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.5 years ago amir.rakhimov.b • 0
0
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2
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959
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How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 2.5 years ago by 67k • written 2.5 years ago by • 0
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4
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1.1k
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getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
2.6 years ago Haoran • 0
0
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1
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1.0k
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 2.9 years ago by 67k • written 2.9 years ago by • 0
0
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1
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873
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 3.0 years ago by 51k • written 3.0 years ago by • 0
1
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3
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1.4k
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Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 3.1 years ago by 67k • written 3.1 years ago by • 0
0
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2
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747
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Adj. P-value identical and high for all the genes
MicroarrayData
3.1 years ago Adriana • 0
1
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1
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1.4k
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Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 3.1 years ago by 67k • written 3.2 years ago by ▴ 50
3
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5
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2.0k
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Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 3.3 years ago by 51k • written 3.4 years ago by • 0
1
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1
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1.6k
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How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.5 years ago by ★ 4.0k • written 3.5 years ago by • 0
0
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2
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How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.5 years ago waiyin0923 • 0
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2
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1.9k
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WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
3.7 years ago jpwl2 • 0
8
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4
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1.5k
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Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.7 years ago snijesh ▴ 200
3
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9
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1.7k
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limma analysis when only Cy5 was used
MicroarrayData limma Microarray
3.8 years ago • updated 3.7 years ago Daniel.Schnell • 0
35 results • Page 1 of 1
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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2 by icecreamlover • 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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Popular Question to James W. MacDonald 67k
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