Bioconductor Michael Love

Showing : Michael Love • reset

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deseq2 timecourse michael love multiple time points

5.1 years ago cp1015 • 0

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DESeq2 michael love

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by gkuffel ▴ 10

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deseq2 michael love

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by sam.far.7 • 0

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deseq2 michael love

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by Ashu ▴ 10

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deseq2 timecourse multiple time points mlr michael love

updated 6.4 years ago by Michael Love 42k • written 6.4 years ago by ap874 • 0

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Michael Love Salmon tximport tx2gene

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by pvd2107 ▴ 30

6 results • Page 1 of 1

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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k