Bioconductor Metanalysis

Showing : Metanalysis • reset

0

votes

1

reply

864

views

DEGseq Metanalysis

updated 3.4 years ago by Kevin Blighe ★ 4.0k • written 3.4 years ago by biomyscience • 0

1 result • Page 1 of 1

Recent ...

Replies

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

Awards • All

Popular Question to Matthew McCormack ▴ 180

Popular Question to James W. MacDonald 68k