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JAcky
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Kevin Blighe
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written 2.7 years ago by
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2.8 years ago
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Comment: FlowSOM library requires igraph but igraph does not install
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Szabolcs
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The R/igraph Installation FAQ covers most issues:
https://r.igraph.org/articles/installation-troubleshooting.html
Comment: edgeR::cpm() results in negative values from raw counts of 0
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Kinnary
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Thank you very much for the vis suggestion!
Comment: edgeR::cpm() results in negative values from raw counts of 0
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Kinnary
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Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Kinnary
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20
Thank you very much - this is very clear!
Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov
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Michael Love
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I think it will capture it automatically. E.g. if you use the method that focuses on genes lowly or not affected by the treatment, then the…
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