Bioconductor MeDIP-seq

Showing : MeDIP-seq • reset

votes

replies

741

views

R medip-seq MEDIPS

2.0 years ago Luomeng • 0

votes

replies

2.1k

views

MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

3.8 years ago • updated 3.7 years ago rtrivedi1 ▴ 10

votes

replies

1.6k

views

MEDIPS MeDIP-seq

updated 3.4 years ago by Lukas ▴ 20 • written 5.2 years ago by lshepard ▴ 40

votes

replies

912

views

medip-seq createset

updated 6.1 years ago by Bioconductor Community 0 • written 6.2 years ago by oussama.badad • 0

vote

replies

1.2k

views

medips medip-seq dna methylation dmr analysis

updated 6.2 years ago by Lukas Chavez ▴ 570 • written 6.2 years ago by mtefit • 0

votes

replies

987

views

medip-seq methylation CpGs

6.3 years ago saripalligautam86 ▴ 10

vote

replies

2.3k

views

medips bsgenome medip-seq

updated 6.9 years ago by Lukas Chavez ▴ 570 • written 6.9 years ago by vjain • 0

votes

replies

8.1k

views

diffbind medip-seq edger deseq2

updated 5 months ago by khanwaled68 • 0 • written 8.9 years ago by florian.noack ▴ 60

votes

replies

2.2k

views

R medips medip-seq

8.5 years ago • updated 7.7 years ago stb • 0

votes

replies

1.9k

views

medips medip-seq error lukas

updated 7.8 years ago by Matthias Lienhard ▴ 280 • written 7.8 years ago by anupriyaverma1408 • 0

vote

1.4k

views

medips medip-seq peak finding luckas

updated 7.8 years ago by Lukas Chavez ▴ 570 • written 7.8 years ago by anupriyaverma1408 • 0

votes

1.4k

views

medips R medip-seq pair-end reads

updated 8.2 years ago by Lukas Chavez ▴ 570 • written 8.2 years ago by stb • 0

votes

1.3k

views

medips medip-seq R pair-end reads

updated 8.4 years ago by Lukas Chavez ▴ 570 • written 8.4 years ago by stb • 0

vote

1.7k

views

R medip-seq medips bwa

updated 8.5 years ago by Lukas Chavez ▴ 570 • written 8.5 years ago by stb • 0

votes

replies

1.5k

views

annotation chippeakanno rattus norvegicus medip-seq

9.0 years ago Vang Le ▴ 80

15 results • Page 1 of 1

Recent ...

Replies

Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

Votes

A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

Awards • All

Popular Question to maltethodberg ▴ 180