Bioconductor MeDIP-seq

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R medip-seq MEDIPS

2.2 years ago Luomeng • 0

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2.2k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

3.9 years ago • updated 3.8 years ago rtrivedi1 ▴ 10

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1.7k

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MEDIPS MeDIP-seq

updated 3.5 years ago by Lukas ▴ 20 • written 5.4 years ago by lshepard ▴ 40

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934

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medip-seq createset

updated 6.2 years ago by Bioconductor Community 0 • written 6.4 years ago by oussama.badad • 0

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1.2k

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medips medip-seq dna methylation dmr analysis

updated 6.4 years ago by Lukas Chavez ▴ 570 • written 6.4 years ago by mtefit • 0

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1.0k

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medip-seq methylation CpGs

6.4 years ago saripalligautam86 ▴ 10

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2.4k

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medips bsgenome medip-seq

updated 7.0 years ago by Lukas Chavez ▴ 570 • written 7.1 years ago by vjain • 0

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8.5k

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diffbind medip-seq edger deseq2

updated 7 months ago by khanwaled68 • 0 • written 9.1 years ago by florian.noack ▴ 60

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2.3k

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R medips medip-seq

8.6 years ago • updated 7.8 years ago stb • 0

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2.0k

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medips medip-seq error lukas

updated 7.9 years ago by Matthias Lienhard ▴ 280 • written 7.9 years ago by anupriyaverma1408 • 0

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1.5k

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medips medip-seq peak finding luckas

updated 7.9 years ago by Lukas Chavez ▴ 570 • written 7.9 years ago by anupriyaverma1408 • 0

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1.4k

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medips R medip-seq pair-end reads

updated 8.3 years ago by Lukas Chavez ▴ 570 • written 8.3 years ago by stb • 0

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1.3k

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medips medip-seq R pair-end reads

updated 8.5 years ago by Lukas Chavez ▴ 570 • written 8.5 years ago by stb • 0

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1.8k

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R medip-seq medips bwa

updated 8.7 years ago by Lukas Chavez ▴ 570 • written 8.7 years ago by stb • 0

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1.6k

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annotation chippeakanno rattus norvegicus medip-seq

9.1 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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