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News: 2024 May Institute on computation and statistics for mass spectrometry and proteomics
MSstats MSstatsTMT MSstatsShiny MSstatsPTM
13 months ago kohler.d • 0
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Issues setting background in STRINGdb
STRINGdb MSstats
21 months ago samsiljee • 0
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Help about MSstats in skyline
Skyline.MS MSstats R
4.9 years ago pokhf123 • 0
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Memory usage and SWATH2stats
swath dia msstats swath2stats
updated 6.3 years ago by • 0 • written 6.3 years ago by • 0
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MaxQuant to MSstat question
msstats
6.3 years ago yasaman.jami • 0
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Cannot install and load MSstats package
proteomics massspectrometry msstats
updated 6.9 years ago by 1.6k • written 6.9 years ago by • 0
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News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
news proteomics course training msstats News
7.1 years ago mnchoi67 ▴ 40
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object 'feaMeasurements' not found for MSstats
R msstats
updated 7.1 years ago by • 0 • written 7.2 years ago by ▴ 10
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
bioconductor training course msstats proteomics News
7.2 years ago mnchoi67 ▴ 40
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MSstats changes to dataprocess
MSstats
updated 7.2 years ago by ▴ 40 • written 7.2 years ago by • 0
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MSstats package update
MSstats
updated 7.3 years ago by 4.1k • written 7.4 years ago by • 0
11 results • Page 1 of 1
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
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A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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