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News:
2024 May Institute on computation and statistics for mass spectrometry and proteomics
MSstats
MSstatsTMT
MSstatsShiny
MSstatsPTM
15 months ago
kohler.d
• 0
0
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0
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1.0k
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Issues setting background in STRINGdb
STRINGdb
MSstats
22 months ago
samsiljee
• 0
0
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0
replies
725
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Help about MSstats in skyline
Skyline.MS
MSstats
R
5.0 years ago
pokhf123
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0
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2
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1.2k
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Memory usage and SWATH2stats
swath
dia
msstats
swath2stats
updated 6.5 years ago by
Peter
• 0 • written 6.5 years ago by
jess.burns
• 0
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1.2k
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MaxQuant to MSstat question
msstats
6.5 years ago
yasaman.jami
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4
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1.9k
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Cannot install and load MSstats package
proteomics
massspectrometry
msstats
updated 7.1 years ago by
Laurent Gatto
1.6k • written 7.1 years ago by
zz298
• 0
2
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0
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1.6k
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News:
LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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proteomics
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msstats
News
7.2 years ago
mnchoi67
▴ 40
1
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1
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1.3k
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object 'feaMeasurements' not found for MSstats
R
msstats
updated 7.3 years ago by
thx223
• 0 • written 7.4 years ago by
doomloop1
▴ 10
1
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2.3k
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News:
May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
bioconductor
training
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msstats
proteomics
News
7.3 years ago
mnchoi67
▴ 40
1
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1
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1.3k
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MSstats changes to dataprocess
MSstats
updated 7.3 years ago by
mnchoi67
▴ 40 • written 7.3 years ago by
nmay
• 0
1
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1
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1.3k
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MSstats package update
MSstats
updated 7.5 years ago by
shepherl
4.1k • written 7.5 years ago by
tillmann.ruland
• 0
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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