Bioconductor MSIGDB

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916

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GSEABase fgsea msigdb GeneSetEnrichment

7 months ago Assa Yeroslaviz ★ 1.5k

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416

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msigdb fgsea msig

9 months ago Tanvi • 0

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793

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geneset GeneSetEnrichment msigdb

12 months ago Seongsu • 0

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919

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msigdb gmt GSEA

written 13 months ago by Georg • 0

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3.6k

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ssgsea GSVA biotype proteincoding msigdb

updated 6 months ago by tifaGis • 0 • written 16 months ago by snijesh ▴ 200

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2.2k

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msigdb GSEABase GSVA

updated 3.0 years ago by Robert Castelo ★ 3.4k • written 3.0 years ago by forlani.luca • 0

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2.3k

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gseabase msigdb genesetcollection Tutorial

written 6.8 years ago by t.kuilman ▴ 170

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5.0k

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clusterprofiler GSEA MSIGDB

updated 7.1 years ago by Guangchuang Yu ★ 1.2k • written 7.1 years ago by thomasjenner333 • 0

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1.6k

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limma romer msigdb

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by Jon Manning ▴ 40

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1.5k

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category gostats msigdb hypergeometric test

9.7 years ago petyuk ▴ 70

10 results • Page 1 of 1

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Answer: WGCNA by ATpoint ★ 4.8k

> I would like to ask whether it would make sense to first normalize the count data using DESeq2 and VST before performing WGCNA. This …

Answer: cannot download atena annotation for human by Robert Castelo ★ 3.4k

Hi, sorry for the delay in getting back to you, probably by now you found the solution yourself, but just in case you didn't or anybody els…

Answer: Comparison of results obtained from a subset of the data versus the complete dat by swbarnes2 ★ 1.4k

In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.

Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Answer: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

Votes

Answer: Origin of the labels for the SingleCellMultiModal dataset

Answer: PhD scholar

Answer: how to use `arrayWeightsQuick()`?

Having Trouble Using CNE12() and CNE21() in CNEr

Awards • All

Scholar to ATpoint ★ 4.8k