Bioconductor MSIGDB

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787

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GSEABase fgsea msigdb GeneSetEnrichment

5 months ago Assa Yeroslaviz ★ 1.5k

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350

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msigdb fgsea msig

7 months ago Tanvi • 0

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669

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geneset GeneSetEnrichment msigdb

10 months ago Seongsu • 0

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792

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msigdb gmt GSEA

written 10 months ago by Georg • 0

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2.7k

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ssgsea GSVA biotype proteincoding msigdb

updated 4 months ago by Ginny • 0 • written 14 months ago by snijesh ▴ 200

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1.9k

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msigdb GSEABase GSVA

updated 2.9 years ago by Robert Castelo ★ 3.4k • written 2.9 years ago by forlani.luca • 0

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2.2k

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gseabase msigdb genesetcollection Tutorial

written 6.6 years ago by t.kuilman ▴ 170

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4.8k

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clusterprofiler GSEA MSIGDB

updated 6.9 years ago by Guangchuang Yu ★ 1.2k • written 6.9 years ago by thomasjenner333 • 0

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1.6k

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limma romer msigdb

updated 9.4 years ago by James W. MacDonald 68k • written 9.5 years ago by Jon Manning ▴ 40

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1.5k

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category gostats msigdb hypergeometric test

9.5 years ago petyuk ▴ 70

10 results • Page 1 of 1

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Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0

how you did it pls explain

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k

If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…

Votes

A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =

Comment: Unused arguments error without used arguments in GSVA?

Awards • All

Scholar to James W. MacDonald 68k