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MSIGDB
•
reset
2
votes
2
replies
840
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
6 months ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
386
views
Filtering the genesets for fgseaMultiLevel
msigdb
fgsea
msig
8 months ago
Tanvi
• 0
0
votes
2
replies
723
views
How to make GSEAplot with chip set
geneset
GeneSetEnrichment
msigdb
11 months ago
Seongsu
• 0
4
votes
3
replies
860
views
Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb
gmt
GSEA
written 11 months ago by
Georg
• 0
4
votes
4
replies
3.2k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 5 months ago by
tifaGis
• 0 • written 15 months ago by
snijesh
▴ 200
1
vote
1
reply
2.0k
views
Cleaning GeneSets from GSEA
msigdb
GSEABase
GSVA
updated 3.0 years ago by
Robert Castelo
★ 3.4k • written 3.0 years ago by
forlani.luca
• 0
1
vote
1
reply
2.3k
views
Tutorial:
Update gene symbols in GeneSetCollection
gseabase
msigdb
genesetcollection
Tutorial
written 6.7 years ago by
t.kuilman
▴ 170
2
votes
2
replies
4.9k
views
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler
GSEA
MSIGDB
updated 7.0 years ago by
Guangchuang Yu
★ 1.2k • written 7.0 years ago by
thomasjenner333
• 0
1
vote
2
replies
1.6k
views
Update to MSigDB derivates for romer()?
limma
romer
msigdb
updated 9.5 years ago by
James W. MacDonald
68k • written 9.5 years ago by
Jon Manning
▴ 40
0
votes
0
replies
1.5k
views
hyperGTest for MSigDB categories
category
gostats
msigdb
hypergeometric test
9.6 years ago
petyuk
▴ 70
10 results • Page
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Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy
by
Erik Wright
▴ 150
IDTAXA classification can be performed from training sets with or without assigned ranks. In this case it looks like `LearnTaxa()` was not …
Comment: Understanding "gene ratio" when using plotEnrich(c())
by
California Business Journal
• 0
Find the latest [California business articles][1] on California Business Journal, covering success stories, market trends, and expert insig…
Comment: GSEA using clusterprofileR
by
California Business Journal
• 0
California Business Journal is a trusted source in [California news media][1], delivering insightful stories on business trends and industr…
Comment: QLF or LRT in edgeR for paired sample designs?
by
California Business Journal
• 0
California Business Journal delivers the latest [California business news][1], featuring industry trends, company insights, and success sto…
Comment: How many of my genes from my gene list are in each KEGG pathway?
by
California Business Journal
• 0
[California Business Journal][1] helps small and medium-sized businesses grow by sharing their stories and providing publishing services fo…
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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