Bioconductor MSGFplus

Showing : MSGFplus • reset

1

vote

0

replies

519

views

peptide peptideidentification rTANDEM MSGFplus Alternatives

updated 2.1 years ago by shepherl 4.1k • written 2.1 years ago by vaddanki ▴ 10

0

votes

2

replies

1.0k

views

MSGFplus

4.3 years ago yueli7 ▴ 20

0

votes

1

reply

1.5k

views

msgfplus mac java

updated 6.6 years ago by Mike Smith ★ 6.6k • written 6.6 years ago by dgemoets • 0

1

vote

6

replies

2.0k

views

MSGFplus MSGFgui software error

9.2 years ago Owen.Leiser • 0

4 results • Page 1 of 1

Recent ...

Replies

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0

Hello again, Can using inSilicoMerging handle this situation?

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

Awards • All