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MNN
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3
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6
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3.8k
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Carry over variable features when converting FastMNN SCE object to Seurat object
mnn
batchelor
scrna-seq
seurat
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
heir_of_isildur88
• 0
2
votes
2
replies
2.3k
views
Subclustering after MNN batch-correction
batchelor
mnn
scrna-seq
updated 2.7 years ago by
Guandong Shang
▴ 40 • written 5.3 years ago by
heir_of_isildur88
• 0
0
votes
2
replies
1.2k
views
Help with the output from mnnCorrect
mnnCorect
MNN
5.5 years ago
sharvari gujja
▴ 40
2
votes
1
reply
2.6k
views
Batch Corrections (MNN) with TPM values
scRNA-Seq
scater
scran
rna-seq
MNN
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
hamza_karakurt
▴ 60
4 results • Page
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Comment: RNA Seq using Lrt
by
Rob
• 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R?
by
ben
• 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open!
by
Ali
• 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets
by
Gordon Smyth
52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
Comment: FlowSOM library requires igraph but igraph does not install
by
Szabolcs
• 0
The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html
Votes
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Comment: edgeR::cpm() results in negative values from raw counts of 0
Comment: edgeR::cpm() results in negative values from raw counts of 0
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