Bioconductor MNN

Showing : MNN • reset

3

votes

6

replies

3.5k

views

mnn batchelor scrna-seq seurat

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by heir_of_isildur88 • 0

2

votes

2

replies

2.1k

views

batchelor mnn scrna-seq

updated 2.5 years ago by Guandong Shang ▴ 40 • written 5.0 years ago by heir_of_isildur88 • 0

0

votes

2

replies

1.1k

views

mnnCorect MNN

5.3 years ago sharvari gujja ▴ 40

2

votes

1

reply

2.4k

views

scRNA-Seq scater scran rna-seq MNN

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by hamza_karakurt ▴ 60

4 results • Page 1 of 1

Recent ...

Replies

Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Awards • All