Bioconductor MEDIP-seq

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730

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R medip-seq MEDIPS

23 months ago Luomeng • 0

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2.0k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

3.7 years ago • updated 3.6 years ago rtrivedi1 ▴ 10

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1.6k

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MEDIPS MeDIP-seq

updated 3.3 years ago by Lukas ▴ 20 • written 5.2 years ago by lshepard ▴ 40

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905

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medip-seq createset

updated 6.0 years ago by Bioconductor Community 0 • written 6.2 years ago by oussama.badad • 0

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1.2k

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medips medip-seq dna methylation dmr analysis

updated 6.2 years ago by Lukas Chavez ▴ 570 • written 6.2 years ago by mtefit • 0

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975

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medip-seq methylation CpGs

6.2 years ago saripalligautam86 ▴ 10

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2.2k

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medips bsgenome medip-seq

updated 6.8 years ago by Lukas Chavez ▴ 570 • written 6.9 years ago by vjain • 0

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7.9k

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diffbind medip-seq edger deseq2

updated 4 months ago by khanwaled68 • 0 • written 8.9 years ago by florian.noack ▴ 60

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2.2k

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R medips medip-seq

8.4 years ago • updated 7.6 years ago stb • 0

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1.9k

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medips medip-seq error lukas

updated 7.7 years ago by Matthias Lienhard ▴ 280 • written 7.7 years ago by anupriyaverma1408 • 0

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1.4k

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medips medip-seq peak finding luckas

updated 7.7 years ago by Lukas Chavez ▴ 570 • written 7.7 years ago by anupriyaverma1408 • 0

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1.4k

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medips R medip-seq pair-end reads

updated 8.1 years ago by Lukas Chavez ▴ 570 • written 8.1 years ago by stb • 0

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1.3k

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medips medip-seq R pair-end reads

updated 8.3 years ago by Lukas Chavez ▴ 570 • written 8.3 years ago by stb • 0

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1.7k

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R medip-seq medips bwa

updated 8.5 years ago by Lukas Chavez ▴ 570 • written 8.5 years ago by stb • 0

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1.5k

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annotation chippeakanno rattus norvegicus medip-seq

8.9 years ago Vang Le ▴ 80

15 results • Page 1 of 1

Recent ...

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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