updated 1 day ago by
kf
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written 5.4 years ago by
LNathanson
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Answer: Differential variability modelling with vst() expression
by
Michael Love
43k
Looking at differential variance across groups, where you regress out orthogonal nuisance factors from VST data, seems correct and would po…
Answer: Installation error for Rsamtools.
by
James W. MacDonald
67k
It's already installed. Note the warning:
```
Warning message:
package(s) not installed when version(s) same as or greater than curren…
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
by
Nicholas
•
0
Just an update on this: I tried ```tximport``` with ```tx2gene``` objects from the three annotation packages and from the GTF file itself. …
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
by
Nicholas
•
0
Got it, so using the GTF directly rather than any of the annotation packages will yield more accurate results than any of the packages? I g…
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
by
James W. MacDonald
67k
I agree that it's difficult to match an `EnsDb` object to the build, but I think that is orthogonal to OP's issue, which is mapping transcr…
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