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MBD-seq
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0
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2
replies
475
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DiffBind for MBD-seq
MBD-seq
DiffBind
8 months ago
Marianna
▴ 20
0
votes
0
replies
677
views
Using MBD score in MBD-seq
mbd-seq
MethylSeq
2.2 years ago
Marianna
▴ 20
1
vote
1
reply
1.3k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 4.3 years ago by
Matthias Lienhard
▴ 280 • written 4.3 years ago by
mbk0asis
• 0
0
votes
0
replies
1.1k
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Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
8.9 years ago
pm2015
• 0
4 results • Page
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Comment: Cannot extract size factor from DESeq2 analysis
by
s.malik
• 0
Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…
Comment: Design formula for circadian time-course data for vst() function
by
Vishnu
• 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2
by
Tom
• 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Answer: Design formula for circadian time-course data for vst() function
by
ATpoint
★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Votes
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
Comment: Filtering after DESeq
A: Normalized counts from DESeq2 results in similar but not equal total read count?
A: DESeq2: Different Dispersions for different sample groups
A: Contrasts & coefficients in limma
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