Bioconductor Logfoldchange

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DESeq2 p-adjusted-value Logfoldchange

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by bjen731 ▴ 10

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deseq2 R logfoldchange rna-seq

5.6 years ago • updated 5.5 years ago pierre.marin • 0

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deseq2 differential expression logfoldchange lfcshrink lfcthreshold

updated 3.6 years ago by Michael Love 43k • written 6.5 years ago by emi.sch ▴ 40

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DESeq2 logfoldchange counts

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by A ▴ 40

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noiseq logfoldchange

6.7 years ago Aurora ▴ 20

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deseq2 plotMA rnaseq logfoldchange

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by ap_vc21 • 0

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outliers deseq2 logfoldchange

7.0 years ago lirongrossmann ▴ 80

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deseq2 logfoldchange variancestabilizingtransformation

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by lirongrossmann ▴ 80

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deseq2 interactions logfoldchange

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by rrcutler ▴ 70

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deseq2 logfoldchange

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by rraadd_8 • 0

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limma logfoldchange

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by szenitha ▴ 20

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limma logfoldchange

updated 8.5 years ago by Gordon Smyth 52k • written 8.5 years ago by moradzadeh_k921 • 0

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limma arrayweights logfoldchange neqc normalization

updated 8.6 years ago by svlachavas ▴ 840 • written 8.6 years ago by merella.stefania • 0

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deseq2 logfoldchange interactions

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by colaneri ▴ 30

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deseq2 logfoldchange

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by g.atla ▴ 10

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clustering pca deseq2 edger logfoldchange

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by g.atla ▴ 10

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dexseq logfoldchange exon usage

9.1 years ago Assa Yeroslaviz ★ 1.5k

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limma logfoldchange limma design matrix paired samples affymetrix microarrays

updated 9.3 years ago by Ryan C. Thompson ★ 7.9k • written 9.3 years ago by svlachavas ▴ 840

18 results • Page 1 of 1

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

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Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

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