Bioconductor Log2FC

Showing : Log2FC • reset

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1.1k

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fgsea log2FC

4 months ago • updated 3 months ago V_Vibes • 0

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339

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DESeq2 log2FC vst()

updated 4 months ago by ATpoint ★ 4.5k • written 4 months ago by lifeonmars • 0

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817

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DESeq2 SingleCell log2FC

18 months ago paria.alipour • 0

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1.8k

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DESeq2 Log2FC RNASeqData

22 months ago Iwan • 0

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891

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 23 months ago by James W. MacDonald 67k • written 23 months ago by Laia ▴ 10

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5.3k

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DESeq2 log2FC

2.1 years ago User000 • 0

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1.6k

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log2FC DESeq2 GSEA voom limma

updated 2.3 years ago by Gordon Smyth 51k • written 2.3 years ago by Yang Shi ▴ 10

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2.8k

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edger log2FC

written 5.0 years ago by matteo.buti • 0

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1.5k

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deseq2 log2fc standard error timecourse

updated 6.7 years ago by ellascottgm • 0 • written 6.7 years ago by Verena • 0

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1.5k

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deseq2 log2fc shrinkage

updated 6.9 years ago by Michael Love 42k • written 6.9 years ago by aec ▴ 90

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5.9k

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deseq2 L2FC log2fc

updated 7.2 years ago by Michael Love 42k • written 7.3 years ago by sup230 ▴ 30

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4.1k

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deseq2 log2fc

updated 8.0 years ago by Michael Love 42k • written 8.0 years ago by David R ▴ 90

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2.2k

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deseq2 chipseq counts log2fc error

updated 8.4 years ago by Michael Love 42k • written 8.4 years ago by robin.uchiyama • 0

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6.4k

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limma pvalue log2fc log2

updated 23 months ago by James W. MacDonald 67k • written 8.6 years ago by serpalma.v ▴ 60

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6.2k

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deseq2 differential gene expression log2fc

8.6 years ago Osvaldo ▴ 40

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2.5k

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deseq2 R log2fc

updated 8.9 years ago by Michael Love 42k • written 8.9 years ago by Sushant Pawar • 0

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2.0k

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scan Log2FC

updated 9.3 years ago by Gordon Smyth 51k • written 9.3 years ago by Vani ▴ 20

17 results • Page 1 of 1

Recent ...

Replies

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k