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Log2FC
•
reset
1
vote
10
replies
247
views
Ranking the GSEA Results
fgsea
log2FC
updated 1 hour ago by
alserg
▴ 270 • written 6 days ago by
V_Vibes
• 0
1
vote
1
reply
131
views
DESeq2 - vst() - log2FC - no replicates
DESeq2
log2FC
vst()
updated 12 days ago by
ATpoint
★ 4.2k • written 12 days ago by
lifeonmars
• 0
0
votes
2
replies
679
views
Why my log2fcs are too high?
DESeq2
SingleCell
log2FC
14 months ago
paria.alipour
• 0
1
vote
4
replies
1.5k
views
Inverted Log2FC values after DEseq2 analysis
DESeq2
Log2FC
RNASeqData
18 months ago
Iwan
• 0
0
votes
1
reply
730
views
Log2FC in LRT vs Wald in multifactorial design
DESeq2
LRT
multifactorial
up/down-reg
log2FC
updated 18 months ago by
James W. MacDonald
66k • written 18 months ago by
Laia
▴ 10
0
votes
4
replies
4.7k
views
Understanding the Log2FoldChange calculated with DESeq2 and according to formula log2(treated/control)
DESeq2
log2FC
21 months ago
User000
• 0
2
votes
4
replies
1.4k
views
pre-ranked GSEA or not?
log2FC
DESeq2
GSEA
voom
limma
updated 23 months ago by
Gordon Smyth
51k • written 23 months ago by
Yang Shi
▴ 10
1
vote
5
replies
2.5k
views
log2FC calculation in EdgeR
edger
log2FC
written 4.7 years ago by
matteo.buti
• 0
2
votes
4
replies
1.4k
views
Standard error of log2FC from DESeq in time series experiment
deseq2
log2fc
standard error
timecourse
updated 6.4 years ago by
ellascottgm
• 0 • written 6.4 years ago by
Verena
• 0
0
votes
3
replies
1.4k
views
disagreement between log2FoldChange and lfcMLE in DESeq2
deseq2
log2fc
shrinkage
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
aec
▴ 90
1
vote
3
replies
5.3k
views
log2 fold change calculation for DE gene analysis
deseq2
L2FC
log2fc
updated 6.9 years ago by
Michael Love
42k • written 6.9 years ago by
sup230
▴ 30
0
votes
2
replies
3.9k
views
DESEq2 log2FoldChange and lfcSE calculations
deseq2
log2fc
updated 7.7 years ago by
Michael Love
42k • written 7.7 years ago by
David R
▴ 90
2
votes
2
replies
2.0k
views
Can I calculate counts from the base mean and log2fc outputs of DESeq2? Also, can I calculate error for counts values from lfcse output?
deseq2
chipseq
counts
log2fc
error
updated 8.1 years ago by
Michael Love
42k • written 8.1 years ago by
robin.uchiyama
• 0
6
votes
8
replies
5.9k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma
pvalue
log2fc
log2
updated 19 months ago by
James W. MacDonald
66k • written 8.3 years ago by
serpalma.v
▴ 60
1
vote
10
replies
5.9k
views
DESEQ2: apparently wrong log2(fold-change) calculation
deseq2
differential gene expression
log2fc
8.3 years ago
Osvaldo
▴ 40
1
vote
3
replies
2.3k
views
Log2 foldchange in DESeq2
deseq2
R
log2fc
updated 8.6 years ago by
Michael Love
42k • written 8.6 years ago by
Sushant Pawar
• 0
1
vote
5
replies
1.8k
views
Log2FC values very small with SCAN
scan
Log2FC
updated 9.0 years ago by
Gordon Smyth
51k • written 9.0 years ago by
Vani
▴ 20
17 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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