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1.4k

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R quantile list

22 months ago sat • 0

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2.4k

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list save dataframe

updated 2.6 years ago by shepherl 4.1k • written 2.6 years ago by orticello.1160797 ▴ 10

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1.8k

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TCGA tcgabiolinks list reformat

7.0 years ago Guido Hooiveld ★ 4.1k

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4.1k

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dnastringset list stringset

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by vinod.acear ▴ 50

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r iranges findoverlaps IntegerList List

8.4 years ago • updated 8.2 years ago jian_liangli • 0

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coercion data manipulation s4vectors List

8.6 years ago Jurat Shahidin ▴ 80

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deseq2 heatmap clustering file list

updated 9.3 years ago by Michael Love 43k • written 9.4 years ago by chariko • 0

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3.9k

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org.mm.eg.db select list

updated 9.3 years ago by James W. MacDonald 67k • written 9.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.2k

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mirror preferred list

updated 9.7 years ago by Dan Tenenbaum ★ 8.2k • written 9.7 years ago by lejeczek ▴ 10

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Piano List

updated 9.8 years ago by Leif Väremo ▴ 70 • written 9.8 years ago by nonCodingGene ▴ 10

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rle list irange grangeslist

updated 9.8 years ago by Chris Seidel ▴ 80 • written 9.8 years ago by gen ▴ 30

11 results • Page 1 of 1

Recent ...

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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