Showing : Library complexity • reset
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Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.8 years ago Gary ▴ 20
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How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 5.9 years ago by ★ 4.3k • written 5.9 years ago by ▴ 20
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Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0
So I changed it to ~0 + group (with the same plot), but I still don't know if it's good or what to fix if not.
Answer: Newbie Question - adding metadata to an analysis by James W. MacDonald 67k
See [Section 4][1]. But do note that you do not need for the `phenoData` slot to contain the data. You can simply have a 'targets' data.fra…
Comment: Want numbers in DESeq to be seen as numerical, not categorical by swbarnes2 ★ 1.4k
How did you import the data? Did you accidently leave in `stringAsFactors=True`? But I'm not entirely sure that you don't want that to be…
Comment: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k
By version 1.38.0, I mean version 1.38.0 of `MissMethyl`.
Answer: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k
You need to [upgrade to the release version of Bioconductor][1]. You have version 1.38.0 installed which indicates that you are using the p…
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Comment: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
Comment: Theoretical WGCNA Question
Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a
Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a
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