Bioconductor LFC

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1.9k

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deseq2 LFC LRT

written 6.0 years ago by sally.badawi • 0

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1.1k

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GLM prior DESeq LFC

updated 2.7 years ago by Michael Love 43k • written 2.7 years ago by stew • 0

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1.4k

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RNAseq LFC DEseq

3.8 years ago ayy2110 • 0

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2.0k

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deseq2 lfc betaprior

updated 2.3 years ago by Michael Love 43k • written 6.2 years ago by Mariaxi • 0

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15k

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deseq2 lfc coef contrast

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by Anke Busch ▴ 10

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3.2k

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limma microarray DEGs p values lfc

7.7 years ago rkp • 0

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21k

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deseq2 deseq lfc lfcse standard error

updated 7.9 years ago by rraadd_8 • 0 • written 8.0 years ago by tootiki • 0

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2.7k

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microarray limma multiple treatments lfc

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by brionyk9 • 0

8 results • Page 1 of 1

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Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This post does not fit the theme of this forum.

Comment: Unbalanced experiment with multiple samples from each patient. by canarias • 0

Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…

Comment: Gene Set Enrichment Analysis in Bioconductor course by info ▴ 10

If you are interested in Gene Set Enrichment Analysis in R, you can still join us next week for this 4-day Physalia course on GSEA in R and…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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Popular Question to James W. MacDonald 68k