Bioconductor LFC

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2.0k

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deseq2 LFC LRT

written 6.1 years ago by sally.badawi • 0

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1.1k

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GLM prior DESeq LFC

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by stew • 0

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1.4k

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RNAseq LFC DEseq

3.9 years ago ayy2110 • 0

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2.1k

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deseq2 lfc betaprior

updated 2.4 years ago by Michael Love 43k • written 6.3 years ago by Mariaxi • 0

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15k

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deseq2 lfc coef contrast

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by Anke Busch ▴ 10

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3.2k

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limma microarray DEGs p values lfc

7.8 years ago rkp • 0

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21k

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deseq2 deseq lfc lfcse standard error

updated 8.0 years ago by rraadd_8 • 0 • written 8.1 years ago by tootiki • 0

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2.7k

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microarray limma multiple treatments lfc

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by brionyk9 • 0

8 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

what the test method for enrichGO in clusterProfiler?

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