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LFC
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7
replies
2.0k
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LRT test followed by filtering based on LFC
deseq2
LFC
LRT
written 6.2 years ago by
sally.badawi
• 0
1
vote
1
reply
1.1k
views
Gene wise dispersion estimate Process - From the prior to the posterior
GLM
prior
DESeq
LFC
updated 2.9 years ago by
Michael Love
43k • written 2.9 years ago by
stew
• 0
0
votes
1
reply
1.4k
views
Filtering DESeq2 results for | LFC | > 1 genes
RNAseq
LFC
DEseq
3.9 years ago
ayy2110
• 0
0
votes
6
replies
2.1k
views
large range of LFC in DESeq2
deseq2
lfc
betaprior
updated 2.5 years ago by
Michael Love
43k • written 6.4 years ago by
Mariaxi
• 0
17
votes
7
replies
15k
views
DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2
lfc
coef
contrast
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
Anke Busch
▴ 10
6
votes
4
replies
3.3k
views
Identification of DEGs through limma analysis
limma
microarray
DEGs
p values
lfc
7.9 years ago • updated 7.8 years ago
rkp
• 0
4
votes
14
replies
21k
views
standard error value (lfcSE) returned by DeSeq2
deseq2
deseq
lfc
lfcse
standard error
updated 8.1 years ago by
rraadd_8
• 0 • written 8.1 years ago by
tootiki
• 0
2
votes
1
reply
2.8k
views
Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray
limma
multiple treatments
lfc
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
brionyk9
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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