Bioconductor LEA

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pathnotwritable BiocManager LEA

updated 4 months ago by James W. MacDonald 68k • written 4 months ago by gabry.scata ▴ 10

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795

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LEA

2.8 years ago janis • 0

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771

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tracy-widom PCA LEA

3.0 years ago Bruna • 0

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717

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LEA snmf

3.1 years ago Hanan • 0

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3.1k

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lfmm LEA

updated 11 days ago by PW • 0 • written 3.8 years ago by valentinarov • 0

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2.1k

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snmf lea

updated 7.7 years ago by olivier.francois • 0 • written 7.7 years ago by renee.catullo • 0

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2.8k

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LEA lfmm Tutorial

updated 7.8 years ago by eric.frichot • 0 • written 7.8 years ago by afreedman405 • 0

7 results • Page 1 of 1

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Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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