Bioconductor KaryoploteR

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372

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

12 weeks ago remi-xavier.coux ▴ 10

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723

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

22 months ago Shreyash ▴ 10

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2.0k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by rtt100 • 0

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1.1k

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KaryoploteR

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by mpigozzi • 0

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3.6k

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karyoploter

updated 5.5 years ago by bernatgel ▴ 150 • written 5.5 years ago by Aditya ▴ 160

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1.2k

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karyoploteR

updated 5.8 years ago by bernatgel ▴ 150 • written 5.8 years ago by saeed Ur Rehman • 0

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2.2k

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software error R bsgenome karyoploter

updated 7.3 years ago by bernatgel ▴ 150 • written 7.3 years ago by kirannbishwa01 ▴ 20

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1.5k

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karyoploter

updated 7.4 years ago by bgel ▴ 10 • written 7.4 years ago by spr ▴ 10

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1.1k

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KaryoploteR

7.6 years ago Radek ▴ 90

9 results • Page 1 of 1

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Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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