Bioconductor Kallisto

Showing : Kallisto • reset

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DESeq2 Kallisto

updated 10 months ago by dsull ▴ 40 • written 10 months ago by Aaliya • 0

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tximport kallisto

20 months ago • updated 19 months ago Yijing • 0

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rhdf5 Rhdf5lib kallisto tximport

20 months ago Yijing • 0

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tx2gene tximport Arabidopsis_thaliana kallisto

updated 2.1 years ago by James W. MacDonald 67k • written 2.1 years ago by Mikhail Biryukov ▴ 10

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file.exists false kallisto tximport

2.1 years ago cta • 0

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tximport tximportData Quantseq kallisto

2.2 years ago • updated 2.1 years ago duhwa.lee • 0

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DESeq2 tximport Kallisto TMM edgeR

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by BioNovice247 • 0

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856

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Kallisto RNASeq pseudoaligners ShortTandemRepeats

updated 3.5 years ago by James W. MacDonald 67k • written 3.5 years ago by Shu Yi • 0

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rnaseq counts tpm GenomicFeatures kallisto

updated 4.2 years ago by Michael Love 43k • written 4.2 years ago by m93 • 0

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tximport Kallisto H5Fopen

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by zroger499 • 0

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kallisto

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by biok0423 ▴ 20

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kallisto tximport deseq2 counts

5.7 years ago • updated 4.8 years ago Mozart ▴ 30

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tximport kallisto

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by sp21 • 0

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deseq2 Kallisto tximport

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by qwzhang0601 • 0

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kallisto tximport deseq2

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by Mozart ▴ 30

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tximport kallisto rhdf5

5.8 years ago • updated 5.7 years ago uso2015 • 0

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deseq2 kallisto tximport

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by steve.standage • 0

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tximport kallisto

updated 6.0 years ago by Gordon Smyth 52k • written 6.0 years ago by Lucas Carey ▴ 40

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dexseq kallisto NH_tag

updated 6.2 years ago by Alejandro Reyes ★ 1.9k • written 6.2 years ago by j2h2k2 • 0

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deseq2 rnaseq kallisto tximport

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by Yunlu Zhu • 0

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tximport kallisto bioconductor rnaseq

7.0 years ago srdjan.kasapovic0 • 0

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tximport deseq2 kallisto

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by Clara • 0

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kallisto differential isoform usage isoform

7.1 years ago ilyco • 0

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kallisto deseq2 tximport

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by thibault.lorin34 ▴ 20

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deseq2 kallisto

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by deena ▴ 20

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tximport kallisto txdb.mmusculus.ucsc.mm10.knowngene

updated 7.5 years ago by James W. MacDonald 67k • written 7.5 years ago by Kaustav • 0

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deseq2 tximport rnaseq kallisto R

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by birgittenilsson • 0

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kallisto tximport RNA-Seq across species

updated 3.1 years ago by nicolette.sipperly • 0 • written 7.6 years ago by urjaswita ▴ 40

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tximport kallisto

updated 7.6 years ago by Steve Lianoglou ★ 13k • written 7.6 years ago by swamyvinny ▴ 10

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tximport Kallisto rna-seq

updated 7.8 years ago by pablo_garcia05 ▴ 20 • written 8.7 years ago by cguzman.bioinformatics ▴ 10

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rnaseq deseq2 kallisto

8.3 years ago yjliu1127 • 0

31 results • Page 1 of 1

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Comment: Join BOC Sciences at Drug Discovery Chemistry 2024 by boltropeuniveraeidug • 0

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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