Showing : KEGGREST • reset
4
votes
2
replies
502
views
Cannabis and KEGGgraph
KEGGREST GenomicDistributionsData KEGGgraph KEGG
updated 7 months ago by ★ 4.1k • written 7 months ago by ▴ 30
0
votes
0
replies
550
views
Include or exclude N/A genes (those without any KEGG annotation) when running Wilcox test?
KEGGREST KEGG RNASeq
12 months ago mch • 0
1
vote
1
reply
2.0k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 19 months ago by ★ 4.1k • written 19 months ago by ▴ 10
0
votes
2
replies
2.0k
views
keggList curl::curl_fetch_memory(url, handle = handle) ERROR
URL KEGGREST
21 months ago jonathanlecoy • 0
3
votes
13
replies
3.1k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST KEGG gage pathview
2.3 years ago • updated 21 months ago nute11a ▴ 10
0
votes
3
replies
1.2k
views
ROntoTools: Set returned by keggPathwayGraphs is missing 121 pathways reported by keggPathwayNames
KEGGREST ROntoTools KEGG KEGGgraph
2.3 years ago abf ▴ 30
0
votes
3
replies
2.4k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 2.4 years ago by 4.1k • written 2.4 years ago by ★ 2.0k
0
votes
0
replies
1.2k
views
How to compute the "completeness" of a KEGG module using a set of KEGG orthologs? (Module Completion Ratio)
KEGG KEGGREST keggorthology Metagenomics
3.7 years ago jol.espinoz ▴ 40
2
votes
1
reply
1.2k
views
GSEA generate genesets
pathway KEGGREST GSEA
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
0
votes
1
reply
2.1k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
0
votes
2
replies
1.1k
views
how can I find a pathway
kegg KEGGREST
5.0 years ago Bioinformatics ▴ 30
1
vote
8
replies
2.3k
views
KEGGREST mapping between genes and pathways
keggrest mapping genes to pathways
updated 5.8 years ago by 51k • written 5.8 years ago by ▴ 10
3
votes
4
replies
11k
views
How i can get a list of KEGG pathways and its list of genes?
keggrest
updated 6.4 years ago by 25k • written 6.5 years ago by ▴ 10
0
votes
1
reply
937
views
KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
6.5 years ago doctor.dee005 • 0
1
vote
9
replies
3.3k
views
Gene-Metabolite and Metabolite-Pathway network from KEGG with KEGGREST
KEGG keggrest
updated 6.6 years ago by ▴ 10 • written 6.6 years ago by ▴ 20
1
vote
4
replies
2.4k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest chemminer fmcsr graph
written 6.7 years ago by • 0
2
votes
1
reply
1.1k
views
How can I remove the ellipsis and get the complete sequence and results?
keggrest biostrings
updated 6.8 years ago by 4.1k • written 6.8 years ago by ▴ 10
2
votes
1
reply
1.6k
views
Possible bug: outdated result from listDatabases()
KEGGREST bug
updated 7.3 years ago by ▴ 50 • written 7.3 years ago by • 0
0
votes
2
replies
2.8k
views
Accessing KEGG (errors w/ KEGGREST)
KEGG keggrest
updated 7.8 years ago by 51k • written 7.8 years ago by • 0
0
votes
2
replies
1.4k
views
Retrieve KEGG from protein GI
R KEGG KEGGREST
7.9 years ago felipelira3 • 0
0
votes
2
replies
3.5k
views
Get the reactions for a organism using KEGGREST
keggrest
8.5 years ago kjboteroo • 0
0
votes
11
replies
5.0k
views
Examples from keggList in KEGGREST don't all work
software error keggrest
8.7 years ago Bryan Hanson • 0
0
votes
1
reply
1.8k
views
Problem in KEGGREST package function keggConv
KEGGREST keggConv
updated 8.8 years ago by ★ 8.2k • written 8.8 years ago by ▴ 120
2
votes
15
replies
4.3k
views
Timeout error in kegga() using edgeR
edger kegga keggrest
8.9 years ago Likai Mao ▴ 40
1
vote
1
reply
1.6k
views
KEGGREST fail to fetch human genes link to pathway
keggrest clusterProfiler
updated 9.2 years ago by ★ 8.2k • written 9.3 years ago by ★ 1.2k
0
votes
2
replies
8.0k
views
Using Keggrest to convert ncbi gene IDs to kegg orthology and pathway
keggrest kegg keggorthology
updated 10.0 years ago by 67k • written 10.0 years ago by ▴ 100
0
votes
4
replies
3.2k
views
Error: could not find function "plotPCA"
GO affycoretools KEGGREST GO affycoretools KEGGREST
updated 10.5 years ago by 42k • written 10.5 years ago by ▴ 50
0
votes
1
reply
1.6k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 10.9 years ago by 67k • written 10.9 years ago by ★ 13k
0
votes
1
reply
1.6k
views
Error message using arrayweights
GO Cancer mouse4302 KEGGREST GO Cancer mouse4302 KEGGREST
updated 10.9 years ago by ▴ 1000 • written 10.9 years ago by ▴ 80
0
votes
0
replies
1.8k
views
Pathview question
KEGGREST pathview KEGGREST pathview
11.2 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
2.0k
views
trouble reading DNA stringset from keggGet function
PROcess KEGGREST PROcess KEGGREST
updated 11.2 years ago by 67k • written 11.2 years ago by ★ 13k
0
votes
7
replies
5.0k
views
Simple pathway enrichment analysis for gene lists
Microarray Category gage KEGGREST ROntoTools Microarray Category gage KEGGREST ROntoTools
updated 11.2 years ago by ▴ 470 • written 11.2 years ago by ▴ 660
0
votes
0
replies
1.8k
views
SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
11.7 years ago Tarca, Adi ▴ 570
0
votes
0
replies
1.2k
views
KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
11.9 years ago Dan Tenenbaum ★ 8.2k
34 results • Page 1 of 1
Recent ...
Replies
Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Votes
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Scholar to James W. MacDonald 67k
Popular Question to JennyS • 0
Locations • All
France, 3 minutes ago
Spain, 13 minutes ago
EMBL Heidelberg, 17 minutes ago
Denmark, 42 minutes ago
Australia, 48 minutes ago
Traffic: 718 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6