Bioconductor JASPAR

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2.0k

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pwm pfm jaspar motifdb

updated 5.9 years ago by Bioconductor Community 0 • written 6.1 years ago by chrisclarkson100 ▴ 50

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934

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pwm motifs jaspar meme motif analysis

6.0 years ago rbronste ▴ 60

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1.0k

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jaspar rsqlite

updated 6.8 years ago by James W. MacDonald 67k • written 6.8 years ago by m.d.shapiro • 0

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2.6k

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pwm tfbstools jaspar

updated 7.2 years ago by Ge Tan ▴ 20 • written 7.2 years ago by chrisclarkson100 ▴ 50

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1.5k

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transcription jaspar

updated 7.7 years ago by James W. MacDonald 67k • written 7.7 years ago by nia ▴ 30

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2.2k

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motifdb JASPAR transcription factor binding site

9.1 years ago Lisa Hopcroft ▴ 40

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1.5k

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tfbstools jaspar

updated 9.2 years ago by Ge Tan ▴ 20 • written 9.2 years ago by JasonLouisStein • 0

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1.9k

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rgadem motiv chipseq jaspar

updated 9.5 years ago by emercier • 0 • written 9.6 years ago by w.jarassier • 0

8 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

Votes

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k