Bioconductor JASPAR

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2.2k

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pwm pfm jaspar motifdb

updated 6.2 years ago by Bioconductor Community 0 • written 6.4 years ago by chrisclarkson100 ▴ 50

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1.0k

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pwm motifs jaspar meme motif analysis

6.3 years ago rbronste ▴ 60

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1.1k

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jaspar rsqlite

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by m.d.shapiro • 0

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2.7k

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pwm tfbstools jaspar

updated 7.5 years ago by Ge Tan ▴ 20 • written 7.5 years ago by chrisclarkson100 ▴ 50

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1.7k

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transcription jaspar

updated 8.0 years ago by James W. MacDonald 68k • written 8.0 years ago by nia ▴ 30

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motifdb JASPAR transcription factor binding site

9.4 years ago Lisa Hopcroft ▴ 40

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1.6k

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tfbstools jaspar

updated 9.5 years ago by Ge Tan ▴ 20 • written 9.5 years ago by JasonLouisStein • 0

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rgadem motiv chipseq jaspar

updated 9.8 years ago by emercier • 0 • written 9.9 years ago by w.jarassier • 0

8 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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Popular Question to Steve Lianoglou ★ 13k