Bioconductor Isoforms

Showing : Isoforms • reset

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1000

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isoforms DESeq2

2.8 years ago arfranco ▴ 130

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2.3k

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RATs RNA-Seq Isoforms DTU expression

updated 5.5 years ago by fruce_ki ▴ 20 • written 5.5 years ago by UserAnonyme • 0

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1.7k

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isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR

6.6 years ago rbenel ▴ 40

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1.1k

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dexseq differential isoform usage isoforms summarizeoverlaps granges

6.7 years ago A ▴ 40

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1.7k

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cummerbund heatmap isoforms transcript_id

7.8 years ago domenico.somma • 0

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3.7k

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dexseq bitseq cuffdiff Differential exon usage isoforms

9.6 years ago • updated 9.5 years ago elle ▴ 10

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2.7k

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edgeR ruvseq rnaseq isoforms

9.6 years ago sergio.espeso-gil • 0

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1.6k

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DEXSeq transcripts isoforms

updated 9.6 years ago by Alejandro Reyes ★ 1.9k • written 9.7 years ago by peter_venhuizen • 0

8 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40