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Isoform
•
reset
6
votes
10
replies
2.4k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma
isoform
edgeR
salmon
R
updated 8 days ago by
ATpoint
★ 4.6k • written 20 days ago by
mohammedtoufiq91
▴ 10
0
votes
0
replies
503
views
IsoformSwitchAnalyzer
Isoform
IsoformSwitchAnalyzeR
19 months ago
Craig
• 0
0
votes
2
replies
802
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio
isoform
written 2.0 years ago by
lhaiyan3
• 0
0
votes
5
replies
2.7k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData
isoform
DESeq2
2.7 years ago • updated 2.6 years ago
priyanka.m
• 0
0
votes
0
replies
1.6k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
4.2 years ago
ra711
• 0
0
votes
5
replies
1.6k
views
isoform data, deep sequencing and voom
isoform
deep sequencing
voom
updated 4.4 years ago by
Gordon Smyth
52k • written 4.4 years ago by
Ina Hoeschele
▴ 620
0
votes
4
replies
1.3k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport
isoform
voom
updated 4.4 years ago by
Gordon Smyth
52k • written 4.4 years ago by
Ina Hoeschele
▴ 620
1
vote
4
replies
1.5k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer
Isoform
limma
IsoformSwitchAnalyzeR
updated 5.2 years ago by
k.vitting.seerup
▴ 120 • written 5.2 years ago by
asmita
• 0
1
vote
4
replies
1.3k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 5.3 years ago by
swbarnes2
★ 1.4k • written 5.3 years ago by
angel.campos
• 0
1
vote
5
replies
1.5k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer
isoform
differential isoform usage
written 6.0 years ago by
A
▴ 40
0
votes
0
replies
1.1k
views
IsoformSwitchAnalyzeR error input
kallisto
differential isoform usage
isoform
7.1 years ago
ilyco
• 0
11 results • Page
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Recent ...
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Comment: Error in get_anno_data(ontology) : ontology not supported yet...
by
GODseeker
• 0
thank u so much ,god bless u,my dear friend.
Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
• 0
Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
xiaofeiwang198266
• 0
Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …
Answer: Error in get_anno_data(ontology) : ontology not supported yet...
by
Guido Hooiveld
★ 4.1k
Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…
Comment: Build error on kunpeng2 Linux aarch64
by
martin.grigorov
▴ 10
Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…
Votes
Comment: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Comment: Can we get beta values with DMRcate package
Answer: Can we get beta values with DMRcate package
DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)
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martin.grigorov
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James W. MacDonald
67k
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Benjamin
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María Calvo
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Gordon Smyth
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