Bioconductor Isoform

Showing : Isoform • reset

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2.5k

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limma isoform edgeR salmon R

updated 5 weeks ago by ATpoint ★ 4.6k • written 7 weeks ago by mohammedtoufiq91 ▴ 10

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520

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Isoform IsoformSwitchAnalyzeR

20 months ago Craig • 0

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814

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pacbio isoform

written 2.1 years ago by lhaiyan3 • 0

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2.8k

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RNASeqData isoform DESeq2

2.8 years ago • updated 2.6 years ago priyanka.m • 0

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1.6k

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isoform RNA-seq hisat2 stringtie ballgown

4.3 years ago ra711 • 0

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1.6k

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isoform deep sequencing voom

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by Ina Hoeschele ▴ 620

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1.3k

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tximport isoform voom

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by Ina Hoeschele ▴ 620

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1.5k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.3 years ago by k.vitting.seerup ▴ 120 • written 5.3 years ago by asmita • 0

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1.3k

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gene isoform quantification rna-seq

updated 5.4 years ago by swbarnes2 ★ 1.4k • written 5.4 years ago by angel.campos • 0

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1.5k

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isoformswitchanalyzer isoform differential isoform usage

written 6.1 years ago by A ▴ 40

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1.1k

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kallisto differential isoform usage isoform

7.2 years ago ilyco • 0

11 results • Page 1 of 1

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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