Bioconductor Isoform

Showing : Isoform • reset

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2.8k

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limma isoform edgeR salmon R

updated 3 months ago by ATpoint ★ 4.8k • written 4 months ago by mohammedtoufiq91 ▴ 10

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574

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Isoform IsoformSwitchAnalyzeR

23 months ago Craig • 0

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900

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pacbio isoform

written 2.3 years ago by lhaiyan3 • 0

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3.0k

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RNASeqData isoform DESeq2

3.0 years ago • updated 2.9 years ago priyanka.m • 0

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1.8k

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isoform RNA-seq hisat2 stringtie ballgown

4.5 years ago ra711 • 0

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1.7k

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isoform deep sequencing voom

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Ina Hoeschele ▴ 620

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1.4k

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tximport isoform voom

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Ina Hoeschele ▴ 620

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1.6k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.5 years ago by k.vitting.seerup ▴ 120 • written 5.5 years ago by asmita • 0

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1.4k

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gene isoform quantification rna-seq

updated 5.6 years ago by swbarnes2 ★ 1.4k • written 5.6 years ago by angel.campos • 0

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1.6k

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isoformswitchanalyzer isoform differential isoform usage

written 6.3 years ago by A ▴ 60

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1.2k

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kallisto differential isoform usage isoform

7.4 years ago ilyco • 0

11 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

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