Bioconductor Isoform

Showing : Isoform • reset

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482

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Isoform IsoformSwitchAnalyzeR

18 months ago Craig • 0

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783

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pacbio isoform

written 23 months ago by lhaiyan3 • 0

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2.6k

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RNASeqData isoform DESeq2

2.6 years ago • updated 2.5 years ago priyanka.m • 0

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1.5k

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isoform RNA-seq hisat2 stringtie ballgown

4.1 years ago ra711 • 0

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1.5k

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isoform deep sequencing voom

updated 4.3 years ago by Gordon Smyth 51k • written 4.3 years ago by Ina Hoeschele ▴ 620

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1.3k

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tximport isoform voom

updated 4.3 years ago by Gordon Smyth 51k • written 4.3 years ago by Ina Hoeschele ▴ 620

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1.5k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.1 years ago by k.vitting.seerup ▴ 120 • written 5.1 years ago by asmita • 0

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1.3k

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gene isoform quantification rna-seq

updated 5.2 years ago by swbarnes2 ★ 1.4k • written 5.2 years ago by angel.campos • 0

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1.4k

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isoformswitchanalyzer isoform differential isoform usage

written 5.9 years ago by A ▴ 40

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1.1k

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kallisto differential isoform usage isoform

7.0 years ago ilyco • 0

10 results • Page 1 of 1

Recent ...

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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Votes

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

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