Showing : Isoform • reset
6
votes
10
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2.9k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 4 months ago by ★ 4.8k • written 5 months ago by ▴ 10
0
votes
0
replies
593
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
23 months ago Craig • 0
0
votes
2
replies
921
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 2.4 years ago by • 0
0
votes
5
replies
3.0k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData isoform DESeq2
3.0 years ago • updated 2.9 years ago priyanka.m • 0
0
votes
0
replies
1.8k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform RNA-seq hisat2 stringtie ballgown
4.6 years ago ra711 • 0
0
votes
5
replies
1.8k
views
isoform data, deep sequencing and voom
isoform deep sequencing voom
updated 4.7 years ago by 52k • written 4.7 years ago by ▴ 620
0
votes
4
replies
1.5k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport isoform voom
updated 4.8 years ago by 52k • written 4.8 years ago by ▴ 620
1
vote
4
replies
1.7k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 5.6 years ago by ▴ 120 • written 5.6 years ago by • 0
1
vote
4
replies
1.4k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 5.7 years ago by ★ 1.4k • written 5.7 years ago by • 0
1
vote
5
replies
1.6k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer isoform differential isoform usage
written 6.4 years ago by ▴ 60
0
votes
0
replies
1.2k
views
IsoformSwitchAnalyzeR error input
kallisto differential isoform usage isoform
7.5 years ago ilyco • 0
11 results • Page 1 of 1
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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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