Bioconductor Isoform

Showing : Isoform • reset

votes

replies

2.7k

views

limma isoform edgeR salmon R

updated 10 weeks ago by ATpoint ★ 4.7k • written 12 weeks ago by mohammedtoufiq91 ▴ 10

votes

replies

550

views

Isoform IsoformSwitchAnalyzeR

21 months ago Craig • 0

votes

replies

850

views

pacbio isoform

written 2.2 years ago by lhaiyan3 • 0

votes

replies

2.9k

views

RNASeqData isoform DESeq2

2.9 years ago • updated 2.7 years ago priyanka.m • 0

votes

replies

1.7k

views

isoform RNA-seq hisat2 stringtie ballgown

4.4 years ago ra711 • 0

votes

replies

1.7k

views

isoform deep sequencing voom

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by Ina Hoeschele ▴ 620

votes

replies

1.4k

views

tximport isoform voom

updated 4.6 years ago by Gordon Smyth 52k • written 4.6 years ago by Ina Hoeschele ▴ 620

vote

replies

1.6k

views

cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.4 years ago by k.vitting.seerup ▴ 120 • written 5.4 years ago by asmita • 0

vote

replies

1.4k

views

gene isoform quantification rna-seq

updated 5.5 years ago by swbarnes2 ★ 1.4k • written 5.5 years ago by angel.campos • 0

vote

replies

1.6k

views

isoformswitchanalyzer isoform differential isoform usage

written 6.2 years ago by A ▴ 40

votes

replies

1.2k

views

kallisto differential isoform usage isoform

7.3 years ago ilyco • 0

11 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

Awards • All