Bioconductor IntegerList

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r iranges findoverlaps IntegerList List

8.3 years ago • updated 8.0 years ago jian_liangli • 0

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r iranges integerlist DataFrame

updated 8.0 years ago by Jurat Shahidin ▴ 80 • written 8.0 years ago by jian_liangli • 0

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r iranges integerlist

8.1 years ago Jurat Shahidin ▴ 80

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r s4vectors integerlist iranges

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by jian_liangli • 0

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iranges integerlist s4

8.3 years ago Jurat Shahidin ▴ 80

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s4 coercion iranges integerlist

8.3 years ago jian_liangli • 0

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Comment: WGCNA with TPM tables by ATpoint ★ 4.5k

WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

You are an absolute lifesaver, thank you so much for the clarification!

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

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Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

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