Bioconductor IRangesList

Showing : IRangesList • reset

3

votes

6

replies

2.9k

views

grangeslist irangeslist

updated 6.3 years ago by Hervé Pagès 16k • written 6.5 years ago by hicklingmeb ▴ 10

6

votes

6

replies

6.5k

views

genomicranges grangeslist dataframe irangeslist lists

updated 7.2 years ago by Michael Lawrence ★ 11k • written 7.2 years ago by Assa Yeroslaviz ★ 1.5k

0

votes

2

replies

1.4k

views

genomicranges iranges irangeslist grangeslist

updated 7.9 years ago by shepherl 4.1k • written 7.9 years ago by mariamari693693 • 0

0

votes

1

reply

1.5k

views

Views genomicalignments IRangesList coverage RleList

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by ccanchaya • 0

4 results • Page 1 of 1

Recent ...

Replies

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Votes

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

Awards • All

Popular Question to Michael Stadler ▴ 350

Scholar to ATpoint ★ 4.5k

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20