Showing : Hub Genes • reset
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WGCNA with distance matrix only from newick data.
WGCNA eigengene hub genes
7.1 years ago yifangt ▴ 20
3
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2
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Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 8.7 years ago by ★ 3.0k • written 8.7 years ago by ▴ 150
0
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question on visANT after WGCNA
wgcna visant module hub genes
updated 8.7 years ago by • 0 • written 8.7 years ago by • 0
14
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4
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WGCNA Hub Gene Selection Method
WGCNA Hub Genes KmE Intramodular Connectivity
updated 9.4 years ago by ★ 3.0k • written 9.4 years ago by ▴ 150
4 results • Page 1 of 1
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Answer: Crossover design with limma by Gordon Smyth 52k
Your experiment is somewhat more elaborate than a classical crossover design. I would take a simpler a more direct approach that what you a…
Answer: Differential Expression Genes as Independent Variables by Gordon Smyth 52k
Sorry, your question doesn't make sense to me. There are tens of thousands of genes and you can't run a mixed model analysis with one depen…
Comment: What type of counts data to import for performing Isoform analysis in edgeR by Gordon Smyth 52k
ATPoint and I have both already told you that you cannot use any of the output files from nf-core, and why that is so. I explained to you t…
Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth I am exploring workflows for differential transcript expression analysis and have been using the nfcore rnasplice pipeline, w…
Answer: What type of counts data to import for performing Isoform analysis in edgeR by Gordon Smyth 52k
I haven't used nf-core but, from browsing through their documentation, they didn't seem to have any pipeline for differential transcript ex…
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Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Comment: ANOVA like approach of edgeR
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