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HiTC
•
reset
0
votes
3
replies
1.2k
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
2.8 years ago
shikha
• 0
0
votes
6
replies
1.3k
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
5.1 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
1.8k
views
A/B compartments computation: control settings
HiTC
updated 3.7 years ago by
ahmed.abbaselmahdi
• 0 • written 5.7 years ago by
Konstantin Okonechnikov
▴ 40
1
vote
5
replies
2.0k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
6.7 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.5k
views
Gene Density computation in pca.hic
HiTC
6.8 years ago
cath
▴ 30
0
votes
5
replies
1.9k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 7.0 years ago by
Nicolas Servant
▴ 260 • written 7.0 years ago by
René Wiegandt
• 0
3
votes
5
replies
1.7k
views
normLGF yields non-symetric matrices
HiTC
updated 7.9 years ago by
Nicolas Servant
▴ 260 • written 7.9 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
2.6k
views
FourC object from scratch
hi-c
HiTC
fourcseq
9.4 years ago • updated 9.3 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.4k
views
FourC object from scratch
hic-c
hitc
fourcseq
9.4 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
3.1k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
9.5 years ago
Bogdan
▴ 670
0
votes
0
replies
1.0k
views
normalization method for 5C
HiTC
9.5 years ago
Bogdan
▴ 670
0
votes
0
replies
1.2k
views
Problem importing 5C data
importing
HiTC
9.9 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.8k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 12.0 years ago by
Dan Tenenbaum
★ 8.2k • written 12.0 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.6k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 12.1 years ago by
Valerie Obenchain
★ 6.8k • written 12.1 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.4k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 12.1 years ago by
Martin Morgan
25k • written 12.1 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file
by
shocked.tick.zyet
• 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Comment: orgDB
by
jenniferping36
• 0
Thanks for the suggestion! I'll check out the resources.
Comment: sesameDataCache is not work properly on my system
by
Samreen
• 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data
by
James W. MacDonald
68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format
by
James W. MacDonald
68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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