Bioconductor HiCDCPlus

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287

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HiCDCPlus

10 months ago Irene • 0

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523

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JuicerTools HiC HiCDCPlus Java Juicer

written 12 months ago by IsMM • 0

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645

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HiCDCPlus

updated 18 months ago by merve.sahn • 0 • written 19 months ago by ehamrud • 0

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598

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HiCDCPlus

updated 18 months ago by merve.sahn • 0 • written 21 months ago by mlin18 • 0

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1.1k

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HiCDCPlus BSgenome.Hsapiens.UCSC.hg38

updated 18 months ago by merve.sahn • 0 • written 2.0 years ago by Yue • 0

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662

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HiC-DC+ HiCDCPlus

updated 18 months ago by merve.sahn • 0 • written 2.1 years ago by Yue • 0

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842

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HiC-DC+ HiCDCPlus

updated 2.4 years ago by scott • 0 • written 2.8 years ago by 1037144675 • 0

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921

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hicdcdiff HiCDCPlus

updated 2.6 years ago by merve.sahn • 0 • written 2.9 years ago by ta_awwad ▴ 10

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1.4k

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hicd HiCDCPlus

updated 21 months ago by Michelle • 0 • written 3.0 years ago by gamma.jian ▴ 10

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794

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HiC-DC+ HiCDCPlus

updated 2.6 years ago by merve.sahn • 0 • written 3.4 years ago by Hannah • 0

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2.5k

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HiC-DC+ HiCDCPlus BiocParallel

updated 3.8 years ago by koushik • 0 • written 4.1 years ago by Tay ▴ 10

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1.0k

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 2.6 years ago by merve.sahn • 0 • written 4.1 years ago by mtS • 0

12 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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