Showing : HiCDCPlus • reset
0
votes
0
replies
154
views
HiCDCPlus differential interaction error
HiCDCPlus
5 months ago Irene • 0
0
votes
2
replies
348
views
Java error while running HiCDC overview code
JuicerTools HiC HiCDCPlus Java Juicer
written 7 months ago by • 0
0
votes
1
reply
490
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 12 months ago by • 0 • written 13 months ago by • 0
0
votes
1
reply
460
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 12 months ago by • 0 • written 15 months ago by • 0
0
votes
1
reply
855
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus BSgenome.Hsapiens.UCSC.hg38
updated 12 months ago by • 0 • written 19 months ago by • 0
0
votes
1
reply
503
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+ HiCDCPlus
updated 12 months ago by • 0 • written 19 months ago by • 0
0
votes
2
replies
702
views
Could I use HiCDCPlus in plant genome?
HiC-DC+ HiCDCPlus
updated 23 months ago by • 0 • written 2.3 years ago by • 0
0
votes
1
reply
794
views
HiCDCPlus with NO replicates
hicdcdiff HiCDCPlus
updated 2.2 years ago by • 0 • written 2.5 years ago by ▴ 10
0
votes
2
replies
1.1k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd HiCDCPlus
updated 15 months ago by • 0 • written 2.6 years ago by • 0
0
votes
1
reply
668
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+ HiCDCPlus
updated 2.2 years ago by • 0 • written 2.9 years ago by • 0
3
votes
7
replies
2.2k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+ HiCDCPlus BiocParallel
updated 3.3 years ago by • 0 • written 3.6 years ago by ▴ 10
0
votes
3
replies
878
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus HiC-DC+ HiCcompare HiC
updated 2.2 years ago by • 0 • written 3.6 years ago by • 0
12 results • Page 1 of 1
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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Comment: Ranking the GSEA Results by Michael Love 42k
Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…
Comment: Ranking the GSEA Results by V_Vibes • 0
I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…
Comment: Ranking the GSEA Results by V_Vibes • 0
The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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