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HiCDCPlus
•
reset
0
votes
0
replies
266
views
HiCDCPlus differential interaction error
HiCDCPlus
9 months ago
Irene
• 0
0
votes
2
replies
493
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 11 months ago by
IsMM
• 0
0
votes
1
reply
616
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 17 months ago by
merve.sahn
• 0 • written 17 months ago by
ehamrud
• 0
0
votes
1
reply
575
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 17 months ago by
merve.sahn
• 0 • written 19 months ago by
mlin18
• 0
0
votes
1
reply
1.0k
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 17 months ago by
merve.sahn
• 0 • written 23 months ago by
Yue
• 0
0
votes
1
reply
637
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 17 months ago by
merve.sahn
• 0 • written 23 months ago by
Yue
• 0
0
votes
2
replies
820
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 2.3 years ago by
scott
• 0 • written 2.7 years ago by
1037144675
• 0
0
votes
1
reply
894
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 2.5 years ago by
merve.sahn
• 0 • written 2.8 years ago by
ta_awwad
▴ 10
0
votes
2
replies
1.3k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 20 months ago by
Michelle
• 0 • written 2.9 years ago by
gamma.jian
▴ 10
0
votes
1
reply
773
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 2.5 years ago by
merve.sahn
• 0 • written 3.3 years ago by
Hannah
• 0
3
votes
7
replies
2.5k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 3.7 years ago by
koushik
• 0 • written 4.0 years ago by
Tay
▴ 10
0
votes
3
replies
997
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 2.5 years ago by
merve.sahn
• 0 • written 4.0 years ago by
mtS
• 0
12 results • Page
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Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Thili
• 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load
by
andrew.gibbons
• 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
• 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
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A: Up/Down Regulated GeneList from edgeR and R
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Answer: Combining RNAseq and microarray data using edgeR/limma-voom
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