Bioconductor HTSeqCounts

Showing : HTSeqCounts • reset

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deseq2 deseq edgeR rnaseq htseqcounts

6.8 years ago Deepali • 0

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2.1k

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edger htseqcounts

updated 6.9 years ago by Gordon Smyth 52k • written 6.9 years ago by Bioinformatics ▴ 30

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R summarizeoverlaps htseqcounts

updated 7.1 years ago by thokall ▴ 160 • written 7.1 years ago by Walter F. Baumann ▴ 10

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htseqcounts edger

updated 2.2 years ago by Randy • 0 • written 7.3 years ago by mictadlo ▴ 10

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3.5k

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edger htseqcounts

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by mictadlo ▴ 10

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1.3k

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htseqcounts star rnaseq

7.3 years ago Ahdee ▴ 50

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featurecounts SAM htseqcounts

updated 17 months ago by Yang Liao ▴ 450 • written 7.6 years ago by courtney.stairs • 0

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3.8k

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chipseq deseq2 htseqcounts

updated 22 months ago by mhashan.j ▴ 10 • written 7.8 years ago by JunLVI ▴ 40

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edger htseqcounts rnaseq

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by romsdahl • 0

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1.2k

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dexseq_count dexseq htseqcounts

8.3 years ago as1023 • 0

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1.9k

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deseq2 pca tximportdata htseqcounts

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 8.5 years ago by Gordon Smyth 52k • written 8.5 years ago by Ben Mansfeld • 0

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Votes

A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k