Bioconductor HTSeqCounts

Showing : HTSeqCounts • reset

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deseq2 deseq edgeR rnaseq htseqcounts

6.9 years ago Deepali • 0

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2.1k

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edger htseqcounts

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by Bioinformatics ▴ 30

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R summarizeoverlaps htseqcounts

updated 7.2 years ago by thokall ▴ 160 • written 7.2 years ago by Walter F. Baumann ▴ 10

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htseqcounts edger

updated 2.3 years ago by Randy • 0 • written 7.4 years ago by mictadlo ▴ 10

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3.6k

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edger htseqcounts

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by mictadlo ▴ 10

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1.3k

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htseqcounts star rnaseq

7.4 years ago Ahdee ▴ 50

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featurecounts SAM htseqcounts

updated 18 months ago by Yang Liao ▴ 450 • written 7.7 years ago by courtney.stairs • 0

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3.9k

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chipseq deseq2 htseqcounts

updated 23 months ago by mhashan.j ▴ 10 • written 7.9 years ago by JunLVI ▴ 40

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1.2k

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edger htseqcounts rnaseq

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by romsdahl • 0

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1.2k

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dexseq_count dexseq htseqcounts

8.3 years ago as1023 • 0

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deseq2 pca tximportdata htseqcounts

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by Ben Mansfeld • 0

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.7 years ago by Martin Morgan 25k • written 8.8 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k

See swish vignette, these are explained.

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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