Showing : HTSeqCounts • reset
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Normalise counts when tumour samples have normal tissue contamination.
deseq2 deseq edgeR rnaseq htseqcounts
6.8 years ago Deepali • 0
0
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3
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2.1k
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how to read htseq-count
edger htseqcounts
updated 6.8 years ago by 51k • written 6.8 years ago by ▴ 30
1
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1
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2.3k
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Difference between SummarizeOverlaps and HTSeq
R summarizeoverlaps htseqcounts
updated 7.0 years ago by ▴ 160 • written 7.0 years ago by ▴ 10
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2
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4.7k
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Length of 'group' must equal number of columns in 'counts'
htseqcounts edger
updated 2.1 years ago by • 0 • written 7.2 years ago by ▴ 10
3
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7
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3.5k
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read counts for each gene for edgeR
edger htseqcounts
updated 7.2 years ago by 51k • written 7.2 years ago by ▴ 10
2
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2
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1.3k
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Why does total unique map not equal to library size?
htseqcounts star rnaseq
7.2 years ago Ahdee ▴ 50
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5
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2.5k
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FeatureCounts output to SAM like htseq-counts?
featurecounts SAM htseqcounts
updated 16 months ago by ▴ 450 • written 7.5 years ago by • 0
2
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4
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3.8k
views
Error in DESeqDataSetFromHTSeqCount: Gene IDs (first column) differ between files.
chipseq deseq2 htseqcounts
updated 20 months ago by ▴ 10 • written 7.7 years ago by ▴ 40
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1
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1.2k
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RNA-seq: EdgeR's togtags table not correlating to htseq-count's CPM values
edger htseqcounts rnaseq
updated 7.9 years ago by ★ 28k • written 7.9 years ago by • 0
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1.2k
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DEXSeq error: erro in dexseq_count.py
dexseq_count dexseq htseqcounts
8.2 years ago as1023 • 0
0
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7
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1.9k
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PCA results different from th same sample but different counting method
deseq2 pca tximportdata htseqcounts
updated 8.4 years ago by 42k • written 8.4 years ago by ▴ 40
1
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4
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1.9k
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GOSeq: analysis of unsupported genome after HTseq and DEseq2 - building gene lengths, comparing contrasts and understanding results.
deseq2 goseq htseqcounts rnaseq plant
updated 8.5 years ago by 51k • written 8.5 years ago by • 0
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6
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2.1k
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Error: could not find function "HTSeqCounts"
HTSeq HTSeqCounts Could not find function DEXSeq
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 10
13 results • Page 1 of 1
Recent ...
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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