Bioconductor HTSeqCounts

Showing : HTSeqCounts • reset

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1.6k

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deseq2 deseq edgeR rnaseq htseqcounts

7.1 years ago Deepali • 0

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2.2k

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edger htseqcounts

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by Bioinformatics ▴ 30

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R summarizeoverlaps htseqcounts

updated 7.4 years ago by thokall ▴ 160 • written 7.4 years ago by Walter F. Baumann ▴ 10

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4.9k

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htseqcounts edger

updated 2.5 years ago by Randy • 0 • written 7.6 years ago by mictadlo ▴ 10

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3.7k

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edger htseqcounts

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by mictadlo ▴ 10

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htseqcounts star rnaseq

7.6 years ago Ahdee ▴ 60

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2.7k

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featurecounts SAM htseqcounts

updated 21 months ago by Yang Liao ▴ 450 • written 7.9 years ago by courtney.stairs • 0

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4.0k

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chipseq deseq2 htseqcounts

updated 2.1 years ago by mhashan.j ▴ 10 • written 8.1 years ago by JunLVI ▴ 40

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1.3k

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edger htseqcounts rnaseq

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by romsdahl • 0

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1.3k

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dexseq_count dexseq htseqcounts

8.6 years ago as1023 • 0

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2.1k

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deseq2 pca tximportdata htseqcounts

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 8.8 years ago by Gordon Smyth 52k • written 8.8 years ago by Ben Mansfeld • 0

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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