Bioconductor HTA

Showing : HTA • reset

votes

replies

1.4k

views

limma hta affy annotation

updated 5.9 years ago by James W. MacDonald 68k • written 5.9 years ago by RV ▴ 10

votes

replies

2.9k

views

hta customcdf

updated 8.0 years ago by James W. MacDonald 68k • written 8.0 years ago by pbachali ▴ 50

votes

replies

1.5k

views

hta pd.hta.2.0 hta20sttranscriptcluster.db

updated 8.6 years ago by James W. MacDonald 68k • written 8.6 years ago by giroudpaul ▴ 40

votes

replies

6.1k

views

oligo customcdf HTA frma

updated 9.4 years ago by James W. MacDonald 68k • written 9.4 years ago by sanj ▴ 20

vote

replies

2.2k

views

affy qc simpleaffy HTA

updated 9.9 years ago by James W. MacDonald 68k • written 9.9 years ago by Guilherme Rocha ▴ 40

vote

replies

2.9k

views

microarray affy hta 2.0 junction

10.2 years ago rbao.cri • 0

6 results • Page 1 of 1

Recent ...

Replies

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0

Hello again, Can using inSilicoMerging handle this situation?

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

Awards • All