Showing : HIV • reset
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GenomicAlignments - extracting sequence signatures from bam file
bam file HIV cytosine
7.2 years ago achaillon • 0
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Job: Bioinformatician - The Ragon Institute of MGH, MIT and Harvard
bioinformatician job bioinformatics immunology HIV Job
8.0 years ago • updated 7.8 years ago Ragon Institute of MGH, MIT and Harvard • 0
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ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
12.2 years ago SSc Array Core ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
12.2 years ago Porterfield, Toni ▴ 10
0
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3
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1.6k
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Correlation analysis
Microbiome HIV Microbiome HIV
updated 13.2 years ago by 21k • written 13.2 years ago by ▴ 20
0
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1
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1.4k
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eBayes error
HIV HIV
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 570
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0
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1.1k
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Rtreemix (NEW package)
Cancer HIV Rtreemix Cancer HIV Rtreemix
16.6 years ago Jasmina Bogojeska ▴ 30
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postdoc position available at FHCRC
Cancer HIV Cancer HIV
16.9 years ago Harlan Robins ▴ 10
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2.0k
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Postdoctoral position for 'Statistical Methods in Bioinformatics'
Genetics HIV Genetics HIV
18.1 years ago Adrian Alexa ▴ 400
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4
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1.9k
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Using limma with contrast matrix ,replicate spots, donor effects
HIV limma HIV limma
updated 19.9 years ago by 52k • written 20.0 years ago by ▴ 120
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2
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Re: NA's
HIV HIV
22.8 years ago rgentleman ★ 5.5k
11 results • Page 1 of 1
Recent ...
Replies
Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k
Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.
Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0
But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…
Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0
After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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