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GenomicAlignments - extracting sequence signatures from bam file
bam file HIV cytosine
7.4 years ago achaillon • 0
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Job: Bioinformatician - The Ragon Institute of MGH, MIT and Harvard
bioinformatician job bioinformatics immunology HIV Job
8.2 years ago • updated 8.0 years ago Ragon Institute of MGH, MIT and Harvard • 0
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ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
12.3 years ago SSc Array Core ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
12.4 years ago Porterfield, Toni ▴ 10
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Correlation analysis
Microbiome HIV Microbiome HIV
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 20
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eBayes error
HIV HIV
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 570
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Rtreemix (NEW package)
Cancer HIV Rtreemix Cancer HIV Rtreemix
16.8 years ago Jasmina Bogojeska ▴ 30
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postdoc position available at FHCRC
Cancer HIV Cancer HIV
17.1 years ago Harlan Robins ▴ 10
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Postdoctoral position for 'Statistical Methods in Bioinformatics'
Genetics HIV Genetics HIV
18.3 years ago Adrian Alexa ▴ 400
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Using limma with contrast matrix ,replicate spots, donor effects
HIV limma HIV limma
updated 20.1 years ago by 52k • written 20.1 years ago by ▴ 120
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Re: NA's
HIV HIV
23.0 years ago rgentleman ★ 5.5k
11 results • Page 1 of 1
Recent ...
Replies
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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