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GenomicAlignments - extracting sequence signatures from bam file
bam file HIV cytosine
7.6 years ago • updated 7.5 years ago achaillon • 0
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Job: Bioinformatician - The Ragon Institute of MGH, MIT and Harvard
bioinformatician job bioinformatics immunology HIV Job
8.4 years ago • updated 8.1 years ago Ragon Institute of MGH, MIT and Harvard • 0
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ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
12.5 years ago SSc Array Core ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
12.5 years ago Porterfield, Toni ▴ 10
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Correlation analysis
Microbiome HIV Microbiome HIV
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 20
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eBayes error
HIV HIV
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 570
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Rtreemix (NEW package)
Cancer HIV Rtreemix Cancer HIV Rtreemix
16.9 years ago Jasmina Bogojeska ▴ 30
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postdoc position available at FHCRC
Cancer HIV Cancer HIV
17.2 years ago Harlan Robins ▴ 10
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Postdoctoral position for 'Statistical Methods in Bioinformatics'
Genetics HIV Genetics HIV
18.4 years ago Adrian Alexa ▴ 400
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Using limma with contrast matrix ,replicate spots, donor effects
HIV limma HIV limma
updated 20.3 years ago by 52k • written 20.3 years ago by ▴ 120
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Re: NA's
HIV HIV
23.1 years ago rgentleman ★ 5.5k
11 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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