Bioconductor HERVs

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tximport HERVs edgeR DESeq2

updated 3.4 years ago by Michael Love 42k • written 3.4 years ago by rodrigo.duarte88 ▴ 40

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deseq2 HERVs low counts prefiltering dispersion estimates

updated 5.9 years ago by Michael Love 42k • written 6.0 years ago by rodrigo.duarte88 ▴ 40

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Comment: dba.plotProfile() plotting and interpretation by B.N • 0

Hello, Did you ever manage to figure this out?

Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

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Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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