Bioconductor HELP

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HELP

updated 6 weeks ago by James W. MacDonald 68k • written 6 weeks ago by ramya20kumar20 • 0

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HELP path

updated 7 months ago by James W. MacDonald 68k • written 7 months ago by cpierce2 • 0

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bachelorthesis help HELP

updated 18 months ago by DrFizz • 0 • written 18 months ago by melander • 0

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DESeq2 HELP

2.0 years ago • updated 24 months ago Michael • 0

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DESeq2 volcanoplot deseq HELP contrast

updated 2.0 years ago by Basti ▴ 780 • written 2.0 years ago by Michael • 0

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ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene

2.3 years ago michela ▴ 20

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HELP HelloRanges

updated 2.3 years ago by James W. MacDonald 68k • written 2.4 years ago by michela ▴ 20

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HELP ChIC.data PeakDetection ChipOnChipData

2.4 years ago michela ▴ 20

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HELP Data

updated 2.5 years ago by Guido Hooiveld ★ 4.1k • written 2.5 years ago by mcclurejenniferc • 0

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STRINGdb HELP

updated 2.0 years ago by Rodrigo ▴ 10 • written 3.0 years ago by Jessica ▴ 10

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HELP ChIPpeakAnno

3.3 years ago lexi.kellington • 0

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 2.7 years ago by Sanatan • 0 • written 3.9 years ago by dorina.jamniczky • 0

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RNASeqData RNASeq GEO RNASeqR HELP

3.9 years ago hgalmoore • 0

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help software error

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by mafusa20 • 0

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limma time series help

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by rm1238 • 0

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clusterprofiler input files error help

updated 8.0 years ago by Guangchuang Yu ★ 1.2k • written 8.0 years ago by Mataivic • 0

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edger differential gene expression without replicate nested design help

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by knipehf • 0

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R deseq2 differential gene expression help

8.7 years ago fischer87 • 0

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limma help

updated 9.2 years ago by svlachavas ▴ 840 • written 9.2 years ago by libya.tahani • 0

19 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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