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HELP
•
reset
0
votes
5
replies
362
views
Bioconductor unable to update 'curl'
curl
HELP
4 weeks ago
kagodwi2
• 0
0
votes
2
replies
595
views
iam not able to do retrive data using GEOquery R package
HELP
updated 3 months ago by
James W. MacDonald
68k • written 3 months ago by
ramya20kumar20
• 0
0
votes
9
replies
1.7k
views
'path' must be string
HELP
path
updated 9 months ago by
James W. MacDonald
68k • written 9 months ago by
cpierce2
• 0
0
votes
1
reply
586
views
Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 20 months ago by
DrFizz
• 0 • written 20 months ago by
melander
• 0
2
votes
6
replies
2.3k
views
Help me find the bug
DESeq2
HELP
2.2 years ago
Michael
• 0
0
votes
4
replies
2.3k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 2.2 years ago by
Basti
▴ 780 • written 2.2 years ago by
Michael
• 0
0
votes
2
replies
999
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
2.5 years ago
michela
▴ 20
3
votes
4
replies
1.6k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 2.5 years ago by
James W. MacDonald
68k • written 2.5 years ago by
michela
▴ 20
0
votes
10
replies
2.2k
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
2.5 years ago
michela
▴ 20
0
votes
1
reply
862
views
Data visualization
HELP
Data
updated 2.6 years ago by
Guido Hooiveld
★ 4.1k • written 2.6 years ago by
mcclurejenniferc
• 0
2
votes
4
replies
2.7k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 2.2 years ago by
Rodrigo
▴ 10 • written 3.2 years ago by
Jessica
▴ 10
1
vote
2
replies
3.2k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
3.4 years ago
lexi.kellington
• 0
1
vote
9
replies
6.5k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 2.9 years ago by
Sanatan
• 0 • written 4.0 years ago by
dorina.jamniczky
• 0
3
votes
4
replies
1.9k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
4.1 years ago
hgalmoore
• 0
0
votes
1
reply
2.4k
views
setup microbiome error
help
software error
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
mafusa20
• 0
0
votes
2
replies
1.3k
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
rm1238
• 0
1
vote
4
replies
7.5k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 8.1 years ago by
Guangchuang Yu
★ 1.2k • written 8.1 years ago by
Mataivic
• 0
4
votes
5
replies
2.8k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
knipehf
• 0
0
votes
7
replies
2.4k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
8.8 years ago
fischer87
• 0
0
votes
2
replies
1.6k
views
help me to analysis my data
limma
help
updated 9.4 years ago by
svlachavas
▴ 840 • written 9.4 years ago by
libya.tahani
• 0
20 results • Page
1 of 1
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Replies
Answer: Analyzing TnSeq data with DESeq2
by
cold.wolverine.arku
• 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt
by
Rob
• 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R?
by
ben
• 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open!
by
Ali
• 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets
by
Gordon Smyth
52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
Votes
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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