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GoogleGenomics
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Extension to GoogleGenomics: getVariantCalls
GoogleGenomics
genetics
variants
7.7 years ago
Vincent J. Carey, Jr.
6.7k
1 result • Page
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Comment: EdgeR - Apparent Wrong Direction of logFC with Low Count Data
by
blmurphy
• 0
Hi Gordon. It was collation with my edgeR results, BASTA taxonomy, and function gene annotation tables. Prior to doing this last check for …
Answer: Poor dispersion fit in DESeq2
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Michael Love
42k
The fit (red line) doesn't matter because you have so many samples. Note there is almost no shrinkage. Besides that you may be intereste…
Answer: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
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Michael Love
42k
I'd recommend actually meeting with a local statistician to work out the analysis plan, or someone familiar with linear models in R. I h…
Answer: DESeq2 design and contrasts with 2 drug-treated and one control group
by
Michael Love
42k
> Now I am interested in comparing the DE genes between the resistant and acute groups, but I am unsure how to account for DMSO in that com…
Answer: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat
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Laurent Gatto
1.6k
Tthis happens because the sequence spectraVariable is expected to be an atomic vector or a List with elements of length 1, but it's not - s…
Votes
Answer: ISO a solution to rank-order introns by transcript
Answer: ISO a solution to rank-order introns by transcript
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
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