Bioconductor GenomicScores

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txdbmaker GenomicScores phastCons100way.UCSC.hg38 GenomicFeatures

10 weeks ago rania.alanany • 0

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1.5k

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GenomicScores

updated 2.4 years ago by Robert Castelo ★ 3.4k • written 2.6 years ago by Robert • 0

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2.9k

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GenomicScores MafH5.gnomAD.v3.1.1.GRCh38

updated 2.6 years ago by Robert Castelo ★ 3.4k • written 2.8 years ago by Robert • 0

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1.8k

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GenomicScores

updated 3.3 years ago by Robert Castelo ★ 3.4k • written 3.4 years ago by nattzy94 ▴ 20

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4.1k

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genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer

updated 10 weeks ago by rania.alanany • 0 • written 4.9 years ago by Biologist ▴ 120

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Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

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Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

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