Bioconductor GenomicRange

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GenomicRange GenomicRanges

10 months ago mat149 ▴ 80

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DESeq2 version3.16 installation bioconductor GenomicRange

updated 2.0 years ago by James W. MacDonald 67k • written 2.0 years ago by hong • 0

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genomicrange

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by AZ ▴ 30

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genomicrange intersect

updated 4.7 years ago by James W. MacDonald 67k • written 4.7 years ago by AZ ▴ 30

4 results • Page 1 of 1

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Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

@[sandtrix][1] This is useful information. [1]: https://sandtrix.io

Votes

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

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Teacher to dsull ▴ 40