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GenomicRange
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Need Help w/ Subset on GRangesList
GenomicRange
GenomicRanges
9 months ago
mat149
▴ 80
0
votes
1
reply
1.0k
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DeSeq2 and GenomicRange installation possible conflict with bioconductor version 3.16?
DESeq2
version3.16
installation
bioconductor
GenomicRange
updated 23 months ago by
James W. MacDonald
67k • written 23 months ago by
hong
• 0
1
vote
11
replies
1.1k
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Finding genes with loss of Heterozygosity
genomicrange
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.6 years ago by
AZ
▴ 30
5
votes
2
replies
650
views
Intersecting two big dataframe
genomicrange
intersect
updated 4.6 years ago by
James W. MacDonald
67k • written 4.6 years ago by
AZ
▴ 30
4 results • Page
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Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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