Showing : GenomicInteractions • reset
1
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subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet subsetByOverlaps GenomicInteractions
16 months ago LaureTomas ▴ 10
0
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0
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753
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
3.4 years ago koushik • 0
1
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7
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1.8k
views
problem recasting InteractionSet into a DGEList
diffHic GenomicInteractions edgeR HiC cooler
updated 4.2 years ago by ★ 28k • written 4.2 years ago by ▴ 30
0
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5
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1.3k
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GenomicInteractions duplicate annotations
duplicate GenomicInteractions
4.5 years ago dogancan • 0
0
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4
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969
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duplicated interactions using package GenomicInteractions
GenomicInteractions
4.7 years ago chang.jiaming • 0
0
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4
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1.3k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 4.8 years ago by ▴ 140 • written 4.8 years ago by ▴ 30
2
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3
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930
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Export annotation from GenomicInteractions package
genomicInteractions annotation
updated 5.5 years ago by ▴ 140 • written 5.5 years ago by • 0
0
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3
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1.6k
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Gviz (GenomicInteractions) arc height and boundaries
GenomicInteractions Gviz
updated 5.5 years ago by ▴ 140 • written 5.6 years ago by ▴ 10
0
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2
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1.5k
views
Visualizing 4c-seq as arc
genomicinteractions gviz interactionset
updated 6.0 years ago by ▴ 140 • written 6.0 years ago by • 0
2
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5
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1.6k
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plotCisTrans function in GenomicInteractions package
genomicinteractions
7.2 years ago sarvesh.nikumbh ▴ 10
5
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4
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2.9k
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Plotting genomic interactions in Gviz
gviz genomicinteractions
8.6 years ago enricoferrero ▴ 660
0
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2
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1.3k
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GenomicInteractions read in bedpe error
genomicinteractions GRanges
updated 8.8 years ago by ▴ 140 • written 8.8 years ago by ▴ 200
3
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5
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2.3k
views
GenomicInteractions package read in meta data file
GenomicInteractions
updated 8.9 years ago by ▴ 40 • written 8.9 years ago by ▴ 200
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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