Bioconductor GenomicInteractions

Showing : GenomicInteractions • reset

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665

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InteractionSet subsetByOverlaps GenomicInteractions

17 months ago LaureTomas ▴ 10

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768

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.5 years ago koushik • 0

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1.9k

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diffHic GenomicInteractions edgeR HiC cooler

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by Marco Blanchette ▴ 30

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1.3k

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duplicate GenomicInteractions

4.6 years ago dogancan • 0

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989

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GenomicInteractions

4.8 years ago chang.jiaming • 0

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1.4k

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GenomicInteractions gviz

updated 4.9 years ago by liz.ingsimmons ▴ 140 • written 4.9 years ago by Marco Blanchette ▴ 30

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953

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genomicInteractions annotation

updated 5.5 years ago by liz.ingsimmons ▴ 140 • written 5.6 years ago by ls760 • 0

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1.6k

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GenomicInteractions Gviz

updated 5.6 years ago by liz.ingsimmons ▴ 140 • written 5.6 years ago by Nik dAK ▴ 10

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1.5k

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genomicinteractions gviz interactionset

updated 6.0 years ago by liz.ingsimmons ▴ 140 • written 6.0 years ago by ferbecneu • 0

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1.6k

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genomicinteractions

7.3 years ago sarvesh.nikumbh ▴ 10

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3.0k

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gviz genomicinteractions

8.7 years ago enricoferrero ▴ 660

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1.3k

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genomicinteractions GRanges

updated 8.9 years ago by liz.ingsimmons ▴ 140 • written 8.9 years ago by tangming2005 ▴ 200

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2.3k

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GenomicInteractions

updated 9.0 years ago by Malcolm Perry ▴ 40 • written 9.0 years ago by tangming2005 ▴ 200

13 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

Awards • All

Teacher to dsull ▴ 40