Bioconductor GenomicInteractions

Showing : GenomicInteractions • reset

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515

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InteractionSet subsetByOverlaps GenomicInteractions

12 months ago LaureTomas ▴ 10

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644

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.0 years ago koushik • 0

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1.7k

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diffHic GenomicInteractions edgeR HiC cooler

updated 3.8 years ago by Aaron Lun ★ 28k • written 3.8 years ago by Marco Blanchette ▴ 30

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duplicate GenomicInteractions

4.1 years ago dogancan • 0

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838

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GenomicInteractions

4.3 years ago chang.jiaming • 0

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GenomicInteractions gviz

updated 4.4 years ago by liz.ingsimmons ▴ 140 • written 4.4 years ago by Marco Blanchette ▴ 30

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803

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genomicInteractions annotation

updated 5.1 years ago by liz.ingsimmons ▴ 140 • written 5.1 years ago by ls760 • 0

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1.4k

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GenomicInteractions Gviz

updated 5.2 years ago by liz.ingsimmons ▴ 140 • written 5.2 years ago by Nik dAK ▴ 10

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genomicinteractions gviz interactionset

updated 5.6 years ago by liz.ingsimmons ▴ 140 • written 5.6 years ago by ferbecneu • 0

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1.4k

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genomicinteractions

6.8 years ago sarvesh.nikumbh ▴ 10

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2.6k

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gviz genomicinteractions

8.2 years ago enricoferrero ▴ 660

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1.2k

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genomicinteractions GRanges

updated 8.4 years ago by liz.ingsimmons ▴ 140 • written 8.4 years ago by tangming2005 ▴ 190

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2.1k

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GenomicInteractions

updated 8.5 years ago by Malcolm Perry ▴ 40 • written 8.5 years ago by tangming2005 ▴ 190

13 results • Page 1 of 1

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Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730

You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…

Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0

Thank you all, I solved my issue by creating a for loop. Cheers!

Comment: Ranking the GSEA Results by alserg ▴ 270

Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself

Comment: Ranking the GSEA Results by alserg ▴ 270

Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…

Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Votes

Comment: Ranking the GSEA Results

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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Popular Question to mohammedtoufiq91 ▴ 10