Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
GeneSetEnrichment
•
reset
0
votes
0
replies
130
views
fgsea: ranking genes using log2FC and pvalues derived from spline model
fgsea
GeneSetEnrichment
splines
RNASeq
24 days ago
GT
• 0
0
votes
0
replies
116
views
News:
GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
5 weeks ago
info
▴ 10
0
votes
2
replies
423
views
cameraPR() non directional test
CAMERA
GeneSetEnrichment
6 weeks ago
Hugo Varet
▴ 80
0
votes
1
reply
303
views
News:
Gene Set Enrichment Analysis in Bioconductor course
GSEABase
GeneSetEnrichment
goseq
7 weeks ago • updated 5 weeks ago
info
▴ 10
0
votes
1
reply
173
views
Comparing Mock vs Infected in WT and Knockout Cells
DESeq2
DifferentialExpression
DifferentialRegulation
RNASeq
GeneSetEnrichment
updated 8 weeks ago by
Michael Love
43k • written 8 weeks ago by
Sahil
• 0
2
votes
2
replies
910
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
7 months ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
857
views
How to rank DEG for GSEA using DEseq2 result ?
DESeq2
limma
GeneSetEnrichment
updated 8 months ago by
ATpoint
★ 4.8k • written 8 months ago by
picasa1983
• 0
0
votes
1
reply
1.1k
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
updated 11 months ago by
Guido Hooiveld
★ 4.1k • written 11 months ago by
aogunbaw
• 0
1
vote
2
replies
1.7k
views
geneList error in clusterprofiler
clusterProfiler
GeneSetEnrichment
11 months ago
Ana
• 0
0
votes
2
replies
783
views
How to make GSEAplot with chip set
geneset
GeneSetEnrichment
msigdb
12 months ago
Seongsu
• 0
4
votes
4
replies
4.8k
views
Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler
GO
GO enrichment
genesetenrichment
updated 12 months ago by
jandrade
• 0 • written 7.3 years ago by
Huang, Lei [BSD] - CRI
▴ 20
0
votes
0
replies
659
views
BubbleGUM for multi group comparison of gene set enrichment
RNASeqData
GeneSetEnrichment
multiGSEA
21 months ago
sonal
• 0
0
votes
1
reply
1.7k
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO
GeneSet
clusterProfiler
GeneSetEnrichment
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
manuelsokolov
• 0
0
votes
2
replies
5.5k
views
What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA
GeneSetEnrichment
2.8 years ago
Bhavana
• 0
0
votes
1
reply
1.4k
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
Noy
• 0
12
votes
13
replies
11k
views
GSEA many significant gene sets despite no differentially expressed genes
GSEA
GeneSetEnrichment
DifferentialExpression
updated 14 months ago by
ATpoint
★ 4.8k • written 3.1 years ago by
nhaus
▴ 70
1
vote
0
replies
1.9k
views
GSEA using clusterProfiler with non-model organism.
clusterProfiler
KEGG
GeneSetEnrichment
3.5 years ago
makrez
▴ 10
3
votes
2
replies
1.7k
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 4.3 years ago by
Gordon Smyth
52k • written 4.3 years ago by
prabin.dm
• 0
0
votes
1
reply
1.7k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler
GeneSetEnrichment
enrichplot
updated 4.3 years ago by
Emilia
▴ 40 • written 4.3 years ago by
saw44
• 0
0
votes
0
replies
763
views
Clusterprofiler - best practise for missing ids
ReactomePA
clusterProfiler
GeneSetEnrichment
4.4 years ago
paun_bio
• 0
1
vote
4
replies
3.6k
views
Problem retrieving graphics in clusterprofiler
software error
clusterprofiler
GO
genesetenrichment
8.9 years ago
José Luis Lavín
▴ 10
1
vote
0
replies
1.3k
views
performance of limma gene set analysis in relation to Tarca et al. (2013)
limma
genesetenrichment
updated 9.1 years ago by
Steve Lianoglou
★ 13k • written 9.1 years ago by
Aditya
▴ 160
1
vote
0
replies
1.5k
views
News:
Announcing the EnrichmentBrowser 2.0
genesetenrichment
functional enrichment
enrichmentbrowser
News
9.2 years ago
Ludwig Geistlinger
▴ 70
5
votes
7
replies
5.7k
views
Using goseq on non-model organism - how to define genome?
goseq
go
genesetenrichment
updated 9.3 years ago by
Gordon Smyth
52k • written 9.3 years ago by
Jon Bråte
▴ 260
2
votes
1
reply
1.3k
views
elim method for KEGG pathways?
KEGG
genesetenrichment
elim
updated 9.4 years ago by
James W. MacDonald
68k • written 9.4 years ago by
jacorvar
▴ 40
2
votes
2
replies
2.3k
views
Goseq supported organism (felcat5) has an error when testing
goseq
genesetenrichment
annotation
updated 9.6 years ago by
Nadia Davidson
▴ 320 • written 9.6 years ago by
xyliu00
▴ 20
8
votes
14
replies
4.6k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 10.0 years ago by
willem.ligtenberg
▴ 150 • written 10.4 years ago by
Guangchuang Yu
★ 1.2k
1
vote
1
reply
5.8k
views
Reduce the redundancy of enriched GO terms
GO
topgo
genesetenrichment
updated 10.2 years ago by
Luo Weijun
★ 1.6k • written 10.2 years ago by
Alan Smith
▴ 150
0
votes
0
replies
1.3k
views
Using segAnglePo() for a set of genes
geneexpression
genesetenrichment
segAnglePo
10.3 years ago
Peter.Wood
• 0
0
votes
0
replies
1.9k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment
genesetenrichment
dose
gosemsim
10.4 years ago
Guangchuang Yu
★ 1.2k
0
votes
3
replies
2.1k
views
Running the GSEA algorithm
Microarray
GeneSetEnrichment
PGSEA
GSEABase
GSRI
SeqGSEA
Microarray
GeneSetEnrichment
GSRI
updated 11.0 years ago by
Steve Lianoglou
★ 13k • written 11.0 years ago by
Leif Väremo
▴ 70
31 results • Page
1 of 1
Recent ...
Replies
Comment: BiocParallel_1.40.1.tar.gz not available
by
Johan
• 0
It worked. Thanks :)
Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR
by
skiaphrene
▴ 10
Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…
Comment: how to use `arrayWeightsQuick()`?
by
Gordon Smyth
52k
What sort of object is `expression`? Does it contain any missing values?
Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
shocked.tick.zyet
• 0
Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…
Comment: DESeq2 lfcShrink drastic shrinkage
by
Nick
• 0
Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…
Votes
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
Awards
• All
Popular Question
to
Seymoo
• 0
Popular Question
to
pouryany
• 0
Popular Question
to
story.benjamin
▴ 20
Popular Question
to
snijesh
▴ 200
Popular Question
to
Gordon Smyth
52k
Locations
• All
UPF, Barcelona, Spain,
5 minutes ago
Oslo,
19 minutes ago
United Kingdom,
22 minutes ago
United States,
37 minutes ago
Canada,
39 minutes ago
Traffic: 1016 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6