Showing : GeneSetCollection • reset
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Updating Gene Annotation in GeneSetCollection {GSEABase}
GSEABase annotation gsea gsva GeneSetCollection
updated 5.0 years ago by ★ 3.4k • written 5.0 years ago by ▴ 60
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Tutorial: Update gene symbols in GeneSetCollection
gseabase msigdb genesetcollection Tutorial
written 6.8 years ago by ▴ 170
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Answer: WGCNA by ATpoint ★ 4.8k
> I would like to ask whether it would make sense to first normalize the count data using DESeq2 and VST before performing WGCNA. This …
Answer: cannot download atena annotation for human by Robert Castelo ★ 3.4k
Hi, sorry for the delay in getting back to you, probably by now you found the solution yourself, but just in case you didn't or anybody els…
Answer: Comparison of results obtained from a subset of the data versus the complete dat by swbarnes2 ★ 1.4k
In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.
Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k
If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…
Answer: PhD scholar by ATpoint ★ 4.8k
Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…
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Answer: PhD scholar
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Answer: how to use `arrayWeightsQuick()`?
Having Trouble Using CNE12() and CNE21() in CNEr
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Scholar to ATpoint ★ 4.8k
Popular Question to aguirre ▴ 20
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Scholar to Gordon Smyth 52k
Popular Question to Ariel Chernomoretz ▴ 170
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