Bioconductor GeneSet

Showing : GeneSet • reset

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580

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geneset GeneSetEnrichment msigdb

8 months ago Seongsu • 0

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1.5k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 17 months ago by James W. MacDonald 67k • written 17 months ago by manuelsokolov • 0

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3.0k

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singscore GSVA GSEA subtypes geneset

updated 3.9 years ago by Dharmesh D Bhuva • 0 • written 5.8 years ago by Pietro ▴ 40

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1.2k

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GSVA geneset RNASeq TCGA subtypes

5.9 years ago Pietro ▴ 40

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2.1k

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kegg geneset genelist gage package

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by sup230 ▴ 30

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1.7k

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gseabase geneset

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by siajunren • 0

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1.6k

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cummerbund readcufflinks geneset

9.0 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by James W. MacDonald 67k

Oh, right. There's two ways to enter code. If you are in the middle of a sentence and you want to include a function name, you wrap the nam…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you James, that really helped! I tried CODE `enter code here` but I must have dome it incorrectly, as it showed all in red.

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by James W. MacDonald 67k

Please come back to the support site and view your post - I've fixed it for you. If you want to show people your targets file, just paste t…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you Gordon! Apologies if this is a too basic question-I'm a biologist and want to ensure I understand correctly. Here is my metadata …

Comment: nightmare to make custom txdb for genomes from ToxoDB by rohitsatyam102 ▴ 20

I offer my apologies if the title was misleading. I will change it at once. I wrote txdb because the error emnated from `seqlevelsStyle(txd…

Votes

Answer: nightmare to make custom txdb for genomes from ToxoDB

Comment: nightmare to make custom txdb for genomes from ToxoDB

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw

Answer: nightmare to make custom txdb for genomes from ToxoDB

A: Advice on correcting for batch effect using DESeq2

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Popular Question to Jenny Drnevich ★ 2.0k

Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k