Bioconductor GeneSet

Showing : GeneSet • reset

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532

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geneset GeneSetEnrichment msigdb

7 months ago Seongsu • 0

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1.4k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 16 months ago by James W. MacDonald 67k • written 16 months ago by manuelsokolov • 0

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2.9k

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singscore GSVA GSEA subtypes geneset

updated 3.9 years ago by Dharmesh D Bhuva • 0 • written 5.7 years ago by Pietro ▴ 40

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1.2k

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GSVA geneset RNASeq TCGA subtypes

5.9 years ago Pietro ▴ 40

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2.1k

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kegg geneset genelist gage package

updated 7.3 years ago by Gordon Smyth 51k • written 7.3 years ago by sup230 ▴ 30

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1.7k

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gseabase geneset

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by siajunren • 0

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1.6k

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cummerbund readcufflinks geneset

8.9 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

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Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

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