Bioconductor GeneSet

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630

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geneset GeneSetEnrichment msigdb

9 months ago Seongsu • 0

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1.5k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 18 months ago by James W. MacDonald 67k • written 18 months ago by manuelsokolov • 0

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3.0k

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singscore GSVA GSEA subtypes geneset

updated 4.0 years ago by Dharmesh D Bhuva • 0 • written 5.9 years ago by Pietro ▴ 40

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1.2k

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GSVA geneset RNASeq TCGA subtypes

6.0 years ago Pietro ▴ 40

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2.2k

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kegg geneset genelist gage package

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by sup230 ▴ 30

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1.8k

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gseabase geneset

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by siajunren • 0

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1.6k

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cummerbund readcufflinks geneset

9.1 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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