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GeneMeta
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H bond prediction of two sequences
GeneMeta
generegulation
2.6 years ago
Marcus
• 0
5
votes
4
replies
2.1k
views
meta analysis of microarrays of small sample sizes
preprocessing
microarray
genemeta
updated 8.5 years ago by
alexvpickering
▴ 110 • written 8.5 years ago by
Lian Liu
▴ 20
0
votes
2
replies
1.8k
views
Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd
GeneMeta
metaArray
RankProd
GeneMeta
metaArray
13.7 years ago
boczniak767
▴ 740
0
votes
0
replies
1.1k
views
Obtaining unadjusted permutation p-value from GeneMeta package
GeneMeta
GeneMeta
14.5 years ago
Seungwoo Hwang
▴ 80
0
votes
0
replies
1.3k
views
GeneMeta for 2 color microarray
Microarray
limma
GeneMeta
Microarray
limma
GeneMeta
15.0 years ago
Paul Leo
▴ 970
0
votes
6
replies
1.8k
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Combining two datasets - help to use GeneMeta.
rae230a
affy
GeneMeta
rae230a
affy
GeneMeta
updated 18.9 years ago by
Darlene Goldstein
▴ 230 • written 18.9 years ago by
Sharon Anbu
▴ 480
0
votes
0
replies
953
views
question about the GeneMeta package
GeneMeta
GeneMeta
19.8 years ago
ivan.borozan@utoronto.ca
▴ 80
7 results • Page
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Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2
by
cold.wolverine.arku
• 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt
by
Rob
• 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R?
by
ben
• 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
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A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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