Showing : Gene set • reset
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Creating gene set data for yeast
GAGE gene set go.gsets
updated 4.3 years ago by ★ 1.6k • written 4.3 years ago by ▴ 10
2
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3
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3.8k
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Making a circos plot to show expression for a gene set rather than whole genome
Gene set gene set analysis omiccircos
updated 7.3 years ago by ▴ 20 • written 9.9 years ago by • 0
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0
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1.0k
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User defined gene or metabolite set in globaltest
globaltest gene set
7.9 years ago the_august • 0
2
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2
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1.4k
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Running Roast with Gene Symbols of Curated Genes
mroast roast gene set gene set analysis edgeR
updated 8.5 years ago by 67k • written 8.5 years ago by • 0
4 results • Page 1 of 1
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error by James W. MacDonald 67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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