Showing : GenVisR • reset
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
2.2 years ago Amy_ • 0
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3.5k
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error in package GenVisR while installing
GenVisR GenVis
updated 12 months ago by ▴ 30 • written 2.4 years ago by • 0
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 2.5 years ago by 16k • written 2.5 years ago by • 0
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
2.5 years ago e • 0
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1.3k
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 4.1 years ago by ▴ 30 • written 4.1 years ago by ▴ 10
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
5.1 years ago sheneicechang • 0
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1.1k
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
5.2 years ago sheneicechang • 0
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1.3k
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how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 6.0 years ago by ▴ 30 • written 6.1 years ago by • 0
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994
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Issues with lohSpec
genvisr lohSpec
6.4 years ago dharia.priyadarshani • 0
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1.4k
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Copy Number plot cnSpec - how to order samples
genvisr
6.5 years ago cedric.vmdl • 0
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2.3k
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GenVisR- cnSpec CNV plot
GenVisR
6.9 years ago daijieqiong ▴ 10
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1.4k
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an error in TvTi: package GenVisR
GenVisR
updated 7.8 years ago by ▴ 30 • written 7.8 years ago by ▴ 670
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5
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GenVisR Installation error message
genvisR
8.8 years ago • updated 8.7 years ago Deep Adhya ▴ 20
13 results • Page 1 of 1
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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable by dtzhu337 • 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd by liu.n • 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0
> dim(spe) [1] 19962 425
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Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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